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Spg018939 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018939
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:26884767..26887993
RNA-Seq ExpressionSpg018939
SyntenySpg018939
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]2.3e-1270.18Show/hide
Query:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF
        RPRGNR SLQT +LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+  + +
Subjt:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]9.2e-1470.31Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQKDQRL
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH V +LF    D R+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQKDQRL

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.1e-1444.03Show/hide
Query:  HLFPPKLSEHFKEGVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCQSLGSREPRICVVYVRGNSGQIGWEYNFHFFRPRGNRSSLQTRELDKT----
        H F  KLSE+FKE VK EEEEEFRG  +++ KK         +  Q  Q+LG+    I + +V      IG  Y     RPRGNR SLQT +LDKT    
Subjt:  HLFPPKLSEHFKEGVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCQSLGSREPRICVVYVRGNSGQIGWEYNFHFFRPRGNRSSLQTRELDKT----

Query:  ------------------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
                                VEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  ------------------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]3.0e-1282.35Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PRGNR SLQTRELDKT  IELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]7.8e-1380.39Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PRGNR S QT +LDKTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.1e-1270.18Show/hide
Query:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF
        RPRGNR SLQT +LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+  + +
Subjt:  RPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF

A0A5A7UAH6 CCHC-type domain-containing protein4.5e-1470.31Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQKDQRL
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH V +LF    D R+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQKDQRL

A0A5A7UGD0 Uncharacterized protein5.3e-1544.03Show/hide
Query:  HLFPPKLSEHFKEGVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCQSLGSREPRICVVYVRGNSGQIGWEYNFHFFRPRGNRSSLQTRELDKT----
        H F  KLSE+FKE VK EEEEEFRG  +++ KK         +  Q  Q+LG+    I + +V      IG  Y     RPRGNR SLQT +LDKT    
Subjt:  HLFPPKLSEHFKEGVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCQSLGSREPRICVVYVRGNSGQIGWEYNFHFFRPRGNRSSLQTRELDKT----

Query:  ------------------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
                                VEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  ------------------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5D3BET3 Uncharacterized protein3.8e-1380.39Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PRGNR S QT +LDKTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5D3DWP3 Uncharacterized protein1.4e-1282.35Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PRGNR SLQTRELDKT  IELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGTAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGGGAGTGAAGGAGGA
AGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAATCTCTGGGTAGCAGAG
AACCTCGAATCTGTGTTGTCTATGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATATAATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGG
GAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTC
TGTTCATATTGTAAATGTTTTGTTCAACGTTCAGAAGGATCAGCGGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCAGAGTGTGGTCTGAGTATTGTTGAGAGTCGTG
AGCAACAGAGGTTCACACCTGGAGTGAATCTTTCATGCCGTCAAGACTTCAAGCGTCGACTGGTGGCCAATCATCGAGGCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGTAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGGGAGTGAAGGAGGA
AGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAATCTCTGGGTAGCAGAG
AACCTCGAATCTGTGTTGTCTATGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATATAATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGG
GAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTC
TGTTCATATTGTAAATGTTTTGTTCAACGTTCAGAAGGATCAGCGGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCAGAGTGTGGTCTGAGTATTGTTGAGAGTCGTG
AGCAACAGAGGTTCACACCTGGAGTGAATCTTTCATGCCGTCAAGACTTCAAGCGTCGACTGGTGGCCAATCATCGAGGCAGATGA
Protein sequenceShow/hide protein sequence
MEMDSKTPTTASPIISPISHLFPPKLSEHFKEGVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCQSLGSREPRICVVYVRGNSGQIGWEYNFHFFRPRGNRSSLQTR
ELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQKDQRLDVGSVQIELAECGLSIVESREQQRFTPGVNLSCRQDFKRRLVANHRGR