; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018964 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018964
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:25725839..25734135
RNA-Seq ExpressionSpg018964
SyntenySpg018964
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]4.0e-1282.35Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
        PRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESV V
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.9e-1483.02Show/hide
Query:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
        +LPRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV V
Subjt:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.8e-1372.41Show/hide
Query:  QNRVLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
        +N  +PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESV V +
Subjt:  QNRVLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]3.4e-1183.02Show/hide
Query:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
        V PRGNR SLQT ELDKT  IELPVPDTLPTSAESS S+SSTWLELY ESV V
Subjt:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]7.2e-1480Show/hide
Query:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
        + PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ESV V +
Subjt:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.9e-1282.35Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
        PRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESV V
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
A0A5A7UAH6 CCHC-type domain-containing protein9.2e-1583.02Show/hide
Query:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
        +LPRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV V
Subjt:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
A0A5A7V2F2 Uncharacterized protein1.3e-1372.41Show/hide
Query:  QNRVLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
        +N  +PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESV V +
Subjt:  QNRVLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
A0A5D3BET3 Uncharacterized protein3.5e-1480Show/hide
Query:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
        + PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ESV V +
Subjt:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGV
A0A5D3DWP3 Uncharacterized protein1.6e-1183.02Show/hide
Query:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
        V PRGNR SLQT ELDKT  IELPVPDTLPTSAESS S+SSTWLELY ESV V
Subjt:  VLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGATCCGCCTGGGGTGAGATTCGAGCTTGATCCAAATATTGAAAGAACATTCAGGAGAAGAAGGAGAGAACAGCGAAGAAGTCAAAATCCAATGGATAACGAGTC
GCGTCTCCCAAAAATTCCAGAAGGTCAAGTTGATCCTCAGCAGAATCGTGTGCTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTGCTGGTAGGTGTAGCCCAG
TCGGTTTCGGGGTCAAAACAGCAGGTTAGGTGCGAAGAAGTCTCGTTCAAAACGACCCGCGGTAGACTCGGAACTGCCTCTGTTTTTCCAAAAATGCGATCGTATTTCAT
CTTTCCTTCCCAGAAATGCGGTCGCATTTCTGGGCTCCCAGTAGGCGTAGCGTCGAGACGCTATGTCACAGCGTCGCGACGCTCTAACGTCATCTTTTCTTGGGCTCCAA
GACGTCGCAGCGTCGCGAAGCTACCTAGACAGCGTCGCGACGCTATCGCGATTCTAGAACTCTCCACGCGGCTGCCTAGCGTCGGGACGCTCCAGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGATCCGCCTGGGGTGAGATTCGAGCTTGATCCAAATATTGAAAGAACATTCAGGAGAAGAAGGAGAGAACAGCGAAGAAGTCAAAATCCAATGGATAACGAGTC
GCGTCTCCCAAAAATTCCAGAAGGTCAAGTTGATCCTCAGCAGAATCGTGTGCTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTGCTGGTAGGTGTAGCCCAG
TCGGTTTCGGGGTCAAAACAGCAGGTTAGGTGCGAAGAAGTCTCGTTCAAAACGACCCGCGGTAGACTCGGAACTGCCTCTGTTTTTCCAAAAATGCGATCGTATTTCAT
CTTTCCTTCCCAGAAATGCGGTCGCATTTCTGGGCTCCCAGTAGGCGTAGCGTCGAGACGCTATGTCACAGCGTCGCGACGCTCTAACGTCATCTTTTCTTGGGCTCCAA
GACGTCGCAGCGTCGCGAAGCTACCTAGACAGCGTCGCGACGCTATCGCGATTCTAGAACTCTCCACGCGGCTGCCTAGCGTCGGGACGCTCCAGGCTTAG
Protein sequenceShow/hide protein sequence
MSDPPGVRFELDPNIERTFRRRRREQRRSQNPMDNESRLPKIPEGQVDPQQNRVLPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVLVGVAQ
SVSGSKQQVRCEEVSFKTTRGRLGTASVFPKMRSYFIFPSQKCGRISGLPVGVASRRYVTASRRSNVIFSWAPRRRSVAKLPRQRRDAIAILELSTRLPSVGTLQA