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Spg018972 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018972
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold12:24122879..24127367
RNA-Seq ExpressionSpg018972
SyntenySpg018972
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4072721.1 unnamed protein product [Lactuca saligna]6.7e-2238.51Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK-CILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQPP
        D ND IYPIAW VV  E K +W WFL+LL +D+      G +  SDQ K  I +L K P+ +   +++  +  K Y++ + P+N  ++WP++NY    PP
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK-CILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQPP

Query:  KIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
          RR+ G P  +RK    E + + R  + G  IRCS CK +GH   +C
Subjt:  KIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

CAB4079905.1 unnamed protein product [Lactuca saligna]6.0e-2334.46Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK------------------------------CILYLKKRPEEFVDTYYSKKS
        D ND IYPIAW VV  E K +W WFL+LL +D+      G +  SDQ K                               I +L +  E +VD  +S  +
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK------------------------------CILYLKKRPEEFVDTYYSKKS

Query:  LVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
          K Y++ + P+N  ++WP++NY    PP  RR+PG P  +RK    E + + R  + G  IRCS CK +GHN  +C
Subjt:  LVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

EEE57057.1 hypothetical protein OsJ_06863 [Oryza sativa Japonica Group]3.7e-2036Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKCILYLKKRP---EEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQ
        D N+ +Y +AW VV  E  + W WF+ LL  D+   + +G  F SDQQK IL   ++    + ++   YS  +  KTY   LEPV G + WP+     + 
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKCILYLKKRP---EEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQ

Query:  PPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
         P   ++PG P+ +R+ +  E     +  + G  IRC KCK VGHN  SC
Subjt:  PPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

XP_006596707.1 uncharacterized protein LOC102668754 [Glycine max]8.1e-2035.2Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKC-------ILYLKKR------------------------PEEFVDTYYSKK
        D ND  YP+  VVVE+E KDSW WFLQ L NDIG    K   F  DQQK        ++ L  R                        P + V  YY   
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKC-------ILYLKKR------------------------PEEFVDTYYSKK

Query:  SLVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSCK
        + +  Y+  LEP+NG ++W ++    + PP++R   GIP++ R+ + DEA    + KR   ++RCS+C   GHN R  K
Subjt:  SLVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSCK

XP_016566909.1 PREDICTED: uncharacterized protein LOC107865064 [Capsicum annuum]2.5e-2133.33Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK---------------------CILYLKKRPEEFVDTYYSKKSLVKTYSFFL
        DGN+ + PIAW VV+ E  ++W WF++LL  D+G  + +  T  SD QK                      ILY K  P +FVD+ YSK++ +KTY  ++
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK---------------------CILYLKKRPEEFVDTYYSKKSLVKTYSFFL

Query:  EPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
        +PV   N+WP+S    ++P  +  +P  P+++R     E     +  R G  + CS C G  HN + C
Subjt:  EPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

TrEMBL top hitse value%identityAlignment
A0A1U8GFR0 uncharacterized protein LOC1078650641.2e-2133.33Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK---------------------CILYLKKRPEEFVDTYYSKKSLVKTYSFFL
        DGN+ + PIAW VV+ E  ++W WF++LL  D+G  + +  T  SD QK                      ILY K  P +FVD+ YSK++ +KTY  ++
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK---------------------CILYLKKRPEEFVDTYYSKKSLVKTYSFFL

Query:  EPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
        +PV   N+WP+S    ++P  +  +P  P+++R     E     +  R G  + CS C G  HN + C
Subjt:  EPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

A0A2N9HPW4 Uncharacterized protein5.0e-2338.56Show/hide
Query:  ILSVDGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKCILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLI
        ++ VDGN+ +YPIA+ V E E+ ++W WFL+ L +DI  ++  GI       + I Y     E++VD Y+ KK+ ++ YS  ++P NG + WP +  DL+
Subjt:  ILSVDGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKCILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLI

Query:  QPPKIRRLPGIPRR-QRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSCK
         PP  R+ PG P+R  R+ D +E   S + K    ++RC +C  +GHN RSCK
Subjt:  QPPKIRRLPGIPRR-QRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSCK

A0A6S7KRX2 Uncharacterized protein3.2e-2238.51Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK-CILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQPP
        D ND IYPIAW VV  E K +W WFL+LL +D+      G +  SDQ K  I +L K P+ +   +++  +  K Y++ + P+N  ++WP++NY    PP
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK-CILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQPP

Query:  KIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
          RR+ G P  +RK    E + + R  + G  IRCS CK +GH   +C
Subjt:  KIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

A0A6S7LLF2 Uncharacterized protein2.9e-2334.46Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK------------------------------CILYLKKRPEEFVDTYYSKKS
        D ND IYPIAW VV  E K +W WFL+LL +D+      G +  SDQ K                               I +L +  E +VD  +S  +
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQK------------------------------CILYLKKRPEEFVDTYYSKKS

Query:  LVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
          K Y++ + P+N  ++WP++NY    PP  RR+PG P  +RK    E + + R  + G  IRCS CK +GHN  +C
Subjt:  LVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

B9F065 Uncharacterized protein1.8e-2036Show/hide
Query:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKCILYLKKRP---EEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQ
        D N+ +Y +AW VV  E  + W WF+ LL  D+   + +G  F SDQQK IL   ++    + ++   YS  +  KTY   LEPV G + WP+     + 
Subjt:  DGNDSIYPIAWVVVEAETKDSWAWFLQLLQNDIGSFESKGITFTSDQQKCILYLKKRP---EEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQ

Query:  PPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC
         P   ++PG P+ +R+ +  E     +  + G  IRC KCK VGHN  SC
Subjt:  PPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCKGVGHNSRSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACATAAATCTCATATTCCATTGCAATGGTCGACTTGTTATAGTCGATGATAATAAATATGTTGGGGGAACTGAGATAACTTTGACTGTTGATAGGGACATGTT
ATCTGTCATTGAGTTAAATACGTTGACGTCAAAAGAAAATATATTTAATGTTCAACACCATTGGTATTTGAAGCCGGGTTTACAGCTGCCTCATGGTTTACGTTTAATTA
GGCATGATGAGGATATTTTAAGTGTGGATGGGAACGACTCCATTTATCCGATTGCATGGGTGGTTGTGGAAGCTGAGACAAAGGACAGTTGGGCTTGGTTCCTTCAATTG
CTGCAAAATGACATTGGATCGTTTGAATCTAAAGGAATCACTTTCACGTCTGACCAACAAAAGTGTATCCTCTACTTGAAAAAACGACCCGAAGAATTTGTGGATACTTA
CTACTCTAAAAAATCATTGGTGAAAACATATTCATTCTTTTTAGAGCCTGTTAATGGACACAACCTATGGCCTAAATCGAATTATGATTTGATACAACCACCTAAGATAC
GAAGACTGCCAGGGATACCAAGACGACAAAGGAAGATGGATGTGGATGAGGCTTCTTTTTCCCAACGATTTAAGCGTTGTGGACCTACTATTCGATGTAGTAAATGTAAA
GGGGTAGGTCATAATTCTCGATCATGTAAAGGACCCATGGCTAGGAGCGGGAAACAAACTAGAGGAGAAATGACTTTTATGGGATTCACAATCCCAAACATGGAGGGAGA
TTATTCACAACAATCTCAACTTTTTGGAGCTACGACAGTACGAGACCCACAAATGCCTCAATCTTCGGGATCTATACATATACGACAAAAGAAATTGAGTTTTGAAGCTA
AATTAGAGAAATTGGAGCAAGTGGAATTATTTGGGTGCTCGGGACCTAAAGAAAAGCAAAAGAAACGAAAAAGAAATCAAGTTGGAAGCTTAACACAAGAGGCAAACCCG
AGAGGTAGCATCGAGATGCTGCCTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAACATAAATCTCATATTCCATTGCAATGGTCGACTTGTTATAGTCGATGATAATAAATATGTTGGGGGAACTGAGATAACTTTGACTGTTGATAGGGACATGTT
ATCTGTCATTGAGTTAAATACGTTGACGTCAAAAGAAAATATATTTAATGTTCAACACCATTGGTATTTGAAGCCGGGTTTACAGCTGCCTCATGGTTTACGTTTAATTA
GGCATGATGAGGATATTTTAAGTGTGGATGGGAACGACTCCATTTATCCGATTGCATGGGTGGTTGTGGAAGCTGAGACAAAGGACAGTTGGGCTTGGTTCCTTCAATTG
CTGCAAAATGACATTGGATCGTTTGAATCTAAAGGAATCACTTTCACGTCTGACCAACAAAAGTGTATCCTCTACTTGAAAAAACGACCCGAAGAATTTGTGGATACTTA
CTACTCTAAAAAATCATTGGTGAAAACATATTCATTCTTTTTAGAGCCTGTTAATGGACACAACCTATGGCCTAAATCGAATTATGATTTGATACAACCACCTAAGATAC
GAAGACTGCCAGGGATACCAAGACGACAAAGGAAGATGGATGTGGATGAGGCTTCTTTTTCCCAACGATTTAAGCGTTGTGGACCTACTATTCGATGTAGTAAATGTAAA
GGGGTAGGTCATAATTCTCGATCATGTAAAGGACCCATGGCTAGGAGCGGGAAACAAACTAGAGGAGAAATGACTTTTATGGGATTCACAATCCCAAACATGGAGGGAGA
TTATTCACAACAATCTCAACTTTTTGGAGCTACGACAGTACGAGACCCACAAATGCCTCAATCTTCGGGATCTATACATATACGACAAAAGAAATTGAGTTTTGAAGCTA
AATTAGAGAAATTGGAGCAAGTGGAATTATTTGGGTGCTCGGGACCTAAAGAAAAGCAAAAGAAACGAAAAAGAAATCAAGTTGGAAGCTTAACACAAGAGGCAAACCCG
AGAGGTAGCATCGAGATGCTGCCTCCTTAG
Protein sequenceShow/hide protein sequence
MDNINLIFHCNGRLVIVDDNKYVGGTEITLTVDRDMLSVIELNTLTSKENIFNVQHHWYLKPGLQLPHGLRLIRHDEDILSVDGNDSIYPIAWVVVEAETKDSWAWFLQL
LQNDIGSFESKGITFTSDQQKCILYLKKRPEEFVDTYYSKKSLVKTYSFFLEPVNGHNLWPKSNYDLIQPPKIRRLPGIPRRQRKMDVDEASFSQRFKRCGPTIRCSKCK
GVGHNSRSCKGPMARSGKQTRGEMTFMGFTIPNMEGDYSQQSQLFGATTVRDPQMPQSSGSIHIRQKKLSFEAKLEKLEQVELFGCSGPKEKQKKRKRNQVGSLTQEANP
RGSIEMLPP