; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018975 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018975
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationscaffold12:24087931..24095332
RNA-Seq ExpressionSpg018975
SyntenySpg018975
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8712804.1 hypothetical protein F3Y22_tig00110223pilonHSYRG00028 [Hibiscus syriacus]1.6e-1331.71Show/hide
Query:  MNSQVVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNL----QDFPHAGYNEMAAAPSNEHLNAAVRKRLLPTTHDSTVSRERVLLAFAILRSLSID
        +N+ +V+EFY+NI E     +MVHG+++ ++P AIN  + L    Q       +     P  +  N  ++ +LLPT+H++TVS +R++L  +I+  L+ID
Subjt:  MNSQVVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNL----QDFPHAGYNEMAAAPSNEHLNAAVRKRLLPTTHDSTVSRERVLLAFAILRSLSID

Query:  VGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLD-KGIIDTPNL----ARLQRTHEARQGGLVCGIHQILEQLTLSASRQEFARGKLK
        +GKII  +   C ++    L  PN I+ L ++  V E     IL    G+    +L     R  +   ARQ  L      +  QL    SRQ      LK
Subjt:  VGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLD-KGIIDTPNL----ARLQRTHEARQGGLVCGIHQILEQLTLSASRQEFARGKLK

Query:  PIGLM
         I LM
Subjt:  PIGLM

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]3.5e-1334.05Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE---------------MAAAPSNEHLNAA------------------VRKRL
        +VREFYAN+ +     V V GV V WS  AIN+++ L D    H+ + E               +A A  N     A                  ++  L
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE---------------MAAAPSNEHLNAA------------------VRKRL

Query:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LPTTH  TVS++R+LL  ++L   SI+VG++I SEI  C  +K G LF P+ I+ LC+ A  P       L + G ID   +AR+
Subjt:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]8.3e-1534.95Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDFPHAGYNE----------------MAAAPSNEHLNAA--------------------VRKR
        +VREFYAN+ + E   V V GV V WS  AIN+++ L D P   ++E                +AAA +  +++A                     ++ R
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDFPHAGYNE----------------MAAAPSNEHLNAA--------------------VRKR

Query:  LLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LLPTTH  TVS++R+LL  ++L   SI+VG++I SEI  C  +K G LF P+ I+ LC+ A  P       L + G ID   +AR+
Subjt:  LLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

PON50458.1 hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii]3.0e-1232.43Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDF--PHAGYNEMAAAPS--------------------------NEHLNAA-------VRKRL
        +VREFY N+   +   V V GV V  S  AIN++Y L D    H+ + E    P                              LN         ++ RL
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDF--PHAGYNEMAAAPS--------------------------NEHLNAA-------VRKRL

Query:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LPTTH   VS+ERVLL +++L   SI++G++I  EI  C  +K+G LF P+ I  +C+ A  P       L + G ID   +AR+
Subjt:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]3.5e-1334.05Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE-------------MAAAPSNEHLNAA--------------------VRKRL
        +VREFYAN+ + E   + V GV V WS  AIN+++ L D    H+ + E             +AAA +  +++A                     ++ RL
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE-------------MAAAPSNEHLNAA--------------------VRKRL

Query:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LPTTH   VS++R+LL  ++L   SI+VG++I SEI  C  +K G LF P+ I+ LC+ A  P       L + G ID   +AR+
Subjt:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)1.7e-1334.05Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE---------------MAAAPSNEHLNAA------------------VRKRL
        +VREFYAN+ +     V V GV V WS  AIN+++ L D    H+ + E               +A A  N     A                  ++  L
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE---------------MAAAPSNEHLNAA------------------VRKRL

Query:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LPTTH  TVS++R+LL  ++L   SI+VG++I SEI  C  +K G LF P+ I+ LC+ A  P       L + G ID   +AR+
Subjt:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

A0A2P5BCG4 Uncharacterized protein (Fragment)4.0e-1534.95Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDFPHAGYNE----------------MAAAPSNEHLNAA--------------------VRKR
        +VREFYAN+ + E   V V GV V WS  AIN+++ L D P   ++E                +AAA +  +++A                     ++ R
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDFPHAGYNE----------------MAAAPSNEHLNAA--------------------VRKR

Query:  LLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LLPTTH  TVS++R+LL  ++L   SI+VG++I SEI  C  +K G LF P+ I+ LC+ A  P       L + G ID   +AR+
Subjt:  LLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

A0A2P5BNT0 Uncharacterized protein (Fragment)1.4e-1232.43Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDF--PHAGYNEMAAAPS--------------------------NEHLNAA-------VRKRL
        +VREFY N+   +   V V GV V  S  AIN++Y L D    H+ + E    P                              LN         ++ RL
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQDF--PHAGYNEMAAAPS--------------------------NEHLNAA-------VRKRL

Query:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LPTTH   VS+ERVLL +++L   SI++G++I  EI  C  +K+G LF P+ I  +C+ A  P       L + G ID   +AR+
Subjt:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

A0A2P5DXM3 Uncharacterized protein1.7e-1334.05Show/hide
Query:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE-------------MAAAPSNEHLNAA--------------------VRKRL
        +VREFYAN+ + E   + V GV V WS  AIN+++ L D    H+ + E             +AAA +  +++A                     ++ RL
Subjt:  VVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNLQD--FPHAGYNE-------------MAAAPSNEHLNAA--------------------VRKRL

Query:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL
        LPTTH   VS++R+LL  ++L   SI+VG++I SEI  C  +K G LF P+ I+ LC+ A  P       L + G ID   +AR+
Subjt:  LPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLDKGIIDTPNLARL

A0A6A3B6J9 RT_RNaseH_2 domain-containing protein7.6e-1431.71Show/hide
Query:  MNSQVVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNL----QDFPHAGYNEMAAAPSNEHLNAAVRKRLLPTTHDSTVSRERVLLAFAILRSLSID
        +N+ +V+EFY+NI E     +MVHG+++ ++P AIN  + L    Q       +     P  +  N  ++ +LLPT+H++TVS +R++L  +I+  L+ID
Subjt:  MNSQVVREFYANIDEEECFQVMVHGVAVDWSPGAINSLYNL----QDFPHAGYNEMAAAPSNEHLNAAVRKRLLPTTHDSTVSRERVLLAFAILRSLSID

Query:  VGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLD-KGIIDTPNL----ARLQRTHEARQGGLVCGIHQILEQLTLSASRQEFARGKLK
        +GKII  +   C ++    L  PN I+ L ++  V E     IL    G+    +L     R  +   ARQ  L      +  QL    SRQ      LK
Subjt:  VGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAKYVILLD-KGIIDTPNL----ARLQRTHEARQGGLVCGIHQILEQLTLSASRQEFARGKLK

Query:  PIGLM
         I LM
Subjt:  PIGLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAGCAAGGTAATCATGAAACAGTAGTTCAGAAGGTTCAGGAAGAGGTAGTGCAGGAACCGTCGTGTCGTCGCCGCTGCAAGCAGAAAGCGGAACGGATTAAAAG
GGTTCGAACAGACACTCCATCTCCGCCTACAACTGAATCGGAAAAAGAGGAACCAGAGAATCAAGGGAAAGAAAAGGCCGAAAAGAAGGCTGTAGAAGATGAAACTGAAA
AGGAAGTCCGTGAAGATAGAGGCAAAGAACCCATGAACTCGCAGGTGGTGCGCGAGTTCTATGCGAACATTGACGAGGAAGAATGTTTTCAAGTGATGGTTCATGGGGTA
GCTGTTGATTGGAGTCCTGGAGCAATTAATTCACTGTACAACCTTCAAGACTTCCCACACGCTGGATATAACGAGATGGCGGCAGCGCCATCTAATGAGCATTTGAATGC
AGCTGTTCGGAAAAGGCTGCTTCCAACAACTCACGACTCCACAGTCTCTCGGGAAAGAGTTCTTTTGGCTTTTGCAATTTTAAGGTCTCTTAGCATCGACGTGGGTAAGA
TCATTGCCAGTGAAATTTTTGGATGTTGGCGTAAGAAGGCAGGGAAATTGTTCATTCCGAATACAATCTCAATGCTTTGTAAGAGAGCGGGGGTTCCAGAAAGTGCAAAA
TATGTGATCTTATTGGACAAGGGAATAATTGACACGCCAAACTTGGCACGACTTCAACGGACGCATGAAGCACGTCAAGGAGGGCTAGTCTGTGGCATTCACCAAATCTT
AGAACAACTCACACTTTCAGCCAGCAGGCAAGAGTTCGCCAGAGGCAAGCTCAAACCTATTGGACTTATGTTAAAAGACGTGATCACACTGAGCATTCCTAACTTAAAAT
TTTCTTCTGAATTTTTGAAGCTTGGACTAGTTAGCTTAATTAGATCAAGGTGTTCTGATCTCCAGAAACCTTTAGCTCGAGCATTTCTTCTAGCCTGGTCATCGCTGCGG
CAAGAAGACTCTGAGAATCCTCAGGTCCTCACCGGAGCTTCGGAAGCAATTCACGGCTTAAAAGAGCGAAACCGGAGCTGGCGACAGCGTCGCGACGCTAGGGTTACTTT
TAGATGTATATTATATGTTTTAACCCATTTGGAAGAATGGAAGCTTTGGAGATTATTTTGTGCAGAATATGTTGCTGGGCGACTTGAGGGAGCAATCTCTGTGCTGGAGC
AAAGCTGGGAACGAAAACTGCCACTTTGGTGCATGAACGATCCGCCTGGGGTGAGGTTCGAGCTTGATCTAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAG
CGTAGACAGCAAAATCAAATGGCTGACGTGCCACGTCCCCCGCAGGGTCCAGAAGATCCAGCTGATCCCCAGCAGAATCGTGTGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAGCAAGGTAATCATGAAACAGTAGTTCAGAAGGTTCAGGAAGAGGTAGTGCAGGAACCGTCGTGTCGTCGCCGCTGCAAGCAGAAAGCGGAACGGATTAAAAG
GGTTCGAACAGACACTCCATCTCCGCCTACAACTGAATCGGAAAAAGAGGAACCAGAGAATCAAGGGAAAGAAAAGGCCGAAAAGAAGGCTGTAGAAGATGAAACTGAAA
AGGAAGTCCGTGAAGATAGAGGCAAAGAACCCATGAACTCGCAGGTGGTGCGCGAGTTCTATGCGAACATTGACGAGGAAGAATGTTTTCAAGTGATGGTTCATGGGGTA
GCTGTTGATTGGAGTCCTGGAGCAATTAATTCACTGTACAACCTTCAAGACTTCCCACACGCTGGATATAACGAGATGGCGGCAGCGCCATCTAATGAGCATTTGAATGC
AGCTGTTCGGAAAAGGCTGCTTCCAACAACTCACGACTCCACAGTCTCTCGGGAAAGAGTTCTTTTGGCTTTTGCAATTTTAAGGTCTCTTAGCATCGACGTGGGTAAGA
TCATTGCCAGTGAAATTTTTGGATGTTGGCGTAAGAAGGCAGGGAAATTGTTCATTCCGAATACAATCTCAATGCTTTGTAAGAGAGCGGGGGTTCCAGAAAGTGCAAAA
TATGTGATCTTATTGGACAAGGGAATAATTGACACGCCAAACTTGGCACGACTTCAACGGACGCATGAAGCACGTCAAGGAGGGCTAGTCTGTGGCATTCACCAAATCTT
AGAACAACTCACACTTTCAGCCAGCAGGCAAGAGTTCGCCAGAGGCAAGCTCAAACCTATTGGACTTATGTTAAAAGACGTGATCACACTGAGCATTCCTAACTTAAAAT
TTTCTTCTGAATTTTTGAAGCTTGGACTAGTTAGCTTAATTAGATCAAGGTGTTCTGATCTCCAGAAACCTTTAGCTCGAGCATTTCTTCTAGCCTGGTCATCGCTGCGG
CAAGAAGACTCTGAGAATCCTCAGGTCCTCACCGGAGCTTCGGAAGCAATTCACGGCTTAAAAGAGCGAAACCGGAGCTGGCGACAGCGTCGCGACGCTAGGGTTACTTT
TAGATGTATATTATATGTTTTAACCCATTTGGAAGAATGGAAGCTTTGGAGATTATTTTGTGCAGAATATGTTGCTGGGCGACTTGAGGGAGCAATCTCTGTGCTGGAGC
AAAGCTGGGAACGAAAACTGCCACTTTGGTGCATGAACGATCCGCCTGGGGTGAGGTTCGAGCTTGATCTAGAAATCGAGAGGACATTCAGGATAAGAAGGAGAGAGCAG
CGTAGACAGCAAAATCAAATGGCTGACGTGCCACGTCCCCCGCAGGGTCCAGAAGATCCAGCTGATCCCCAGCAGAATCGTGTGCTGTAG
Protein sequenceShow/hide protein sequence
MQEQGNHETVVQKVQEEVVQEPSCRRRCKQKAERIKRVRTDTPSPPTTESEKEEPENQGKEKAEKKAVEDETEKEVREDRGKEPMNSQVVREFYANIDEEECFQVMVHGV
AVDWSPGAINSLYNLQDFPHAGYNEMAAAPSNEHLNAAVRKRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIASEIFGCWRKKAGKLFIPNTISMLCKRAGVPESAK
YVILLDKGIIDTPNLARLQRTHEARQGGLVCGIHQILEQLTLSASRQEFARGKLKPIGLMLKDVITLSIPNLKFSSEFLKLGLVSLIRSRCSDLQKPLARAFLLAWSSLR
QEDSENPQVLTGASEAIHGLKERNRSWRQRRDARVTFRCILYVLTHLEEWKLWRLFCAEYVAGRLEGAISVLEQSWERKLPLWCMNDPPGVRFELDLEIERTFRIRRREQ
RRQQNQMADVPRPPQGPEDPADPQQNRVL