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Spg018990 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018990
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold12:24219640..24221589
RNA-Seq ExpressionSpg018990
SyntenySpg018990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054506.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0448.39Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E LE+V CH ++ VE++ +P S S    G  DLS F++ DLLSLPQE K++LI+AL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]6.4e-0445Show/hide
Query:  QREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        Q E  E+V CH ++  E++ +P  S        DLS F+++DLLSLPQE K++LIDAL++
Subjt:  QREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]4.9e-0443.55Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E  E+V CH ++  E++ +P  S        DLS F+++DLLSLPQE K++LIDAL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.4e-0443.55Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E  E+V CH ++  E++ +P  S        DLS F+++DLLSLPQE K++LIDAL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.4e-0443.55Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E  E+V CH ++  E++ +P  S        DLS F+++DLLSLPQE K++LIDAL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein9.0e-0440.32Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E  E++TCH ++  E++ +P+ S        +LS F++ DLLSLPQE K++LI+AL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

A0A5A7V369 Gypsy-like retrotransposase6.9e-0445.45Show/hide
Query:  EIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        E+V+CH ++  E++ +P  S        DLS F++ DLLSLPQE K++LIDAL++
Subjt:  EIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

A0A5D3BE72 Ty3-gypsy retrotransposon protein4.1e-0441.94Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E  E+V CH +D +E++ +P  S        DL  F++ DLLSLPQE K++LI+AL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

A0A5D3BGX4 Retrotransposon gag protein6.3e-0548.39Show/hide
Query:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        + Q E LE+V CH ++ VE++ +P S S    G  DLS F++ DLLSLPQE K++LI+AL++
Subjt:  ESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

A0A5D3BUF9 Reverse transcriptase domain-containing protein3.1e-0439.44Show/hide
Query:  SLAYFEIVKESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD
        SL  F   K    E  ++V CH ++  E++ +P+ S        DLS F++ DLLSLPQE K++LI+AL++
Subjt:  SLAYFEIVKESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACGAAGGTTGGACCGTTGTGGTTTGTCACAAAAGGCGAAAACAAAGTTATGCACGGAAGGAGTCTCGCTTATTTCGAGATAGTAAAAGAAAGTCAAAGAGAGGC
ACTTGAAATTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAA
AAGACTTACTCTCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTGATGCGTTGATGGATTTTTCGAAGGTTAAGTATGCCCATTGGGGAACAGAGTACATTTTCAACTCG
AATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGACCATTGGGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGACCATCAGTTTTTCAAAGGTTAAG
TTTTACCACGAGAAGAGACAAAAAAGAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAACGAAGGTTGGACCGTTGTGGTTTGTCACAAAAGGCGAAAACAAAGTTATGCACGGAAGGAGTCTCGCTTATTTCGAGATAGTAAAAGAAAGTCAAAGAGAGGC
ACTTGAAATTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGACGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAA
AAGACTTACTCTCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTGATGCGTTGATGGATTTTTCGAAGGTTAAGTATGCCCATTGGGGAACAGAGTACATTTTCAACTCG
AATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGACCATTGGGAAAGAAGAGAGTACATTTTCAACTCCGGATGTGACTCGACCATCAGTTTTTCAAAGGTTAAG
TTTTACCACGAGAAGAGACAAAAAAGAA
Protein sequenceShow/hide protein sequence
MRTKVGPLWFVTKGENKVMHGRSLAYFEIVKESQREALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMDFSKVKYAHWGTEYIFNS
NVTRPSAFQRLNMTIGKEESTFSTPDVTRPSVFQRLSFTTRRDKKE