; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019023 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019023
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationscaffold12:24829917..24831188
RNA-Seq ExpressionSpg019023
SyntenySpg019023
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]1.6e-4770.86Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQ                        +DYG SEN +RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMN AYGPCLGMTRM RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]7.5e-5072.85Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQ                        +DYGESENM+RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRM RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]1.2e-4468.21Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGGMKDFYKQ+K SG+S    K SKPSSRKTKS ANSATL S GVQPAALISHG LDL+                        +DYGESEN++RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRMERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_023532644.1 uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]3.6e-4467.55Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGGMKDFYKQ+K SG+S    K SKPSSRKTKS ANSATL S GVQPA LISHG LDL+                        +DYGESEN++RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRMERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]2.6e-5072.85Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGG+KDFYKQ+K SGISK N+KASKPSSRK KSPANSA+LGS  VQPAALISHG LDLQ                        +DYG  ENM+RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRM RWERACNLGLNPPKDIETLLKA KVQLECLWDSRV
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein7.6e-4870.86Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQ                        +DYG SEN +RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMN AYGPCLGMTRM RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 43.6e-5072.85Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQ                        +DYGESENM+RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRM RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 43.6e-5072.85Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGG+KDFYKQ+K SGISK   KASKPSSRKTKSPANSA+LGS  VQPAAL+SHG LDLQ                        +DYGESENM+RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRM RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591436.0e-4568.21Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGGMKDFYKQ+K SG+S    K SKPSSRKTKS ANSATL S GVQPAALISHG LDL+                        +DYGESEN++RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRMERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911821.5e-4366.89Show/hide
Query:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF
        MAS RGGMKDFYKQ+K SG+S    K SKPSS KTKS A+SATL S GVQPAALISHG LDL+                        +DYGESEN++RQF
Subjt:  MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQF

Query:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMNMAYGPCLGMTRMERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  DMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 43.1e-0651.16Show/hide
Query:  ENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLL
        E ++  FD    YGP LGMTRM+RW+RA N  LNPP+ +  +L
Subjt:  ENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 43.3e-0842.37Show/hide
Query:  ESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        E   ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +L++  G  + +C LW
Subjt:  ESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 45.6e-0844.64Show/hide
Query:  DTNDYGESE---NMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA
        DT    + E    ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +LKA
Subjt:  DTNDYGESE---NMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 49.6e-0844.44Show/hide
Query:  DYGESE-NMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        D  E+E  ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +LK   G  + +C LW
Subjt:  DYGESE-NMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 41.7e-3150Show/hide
Query:  MASVRGGMKDFYKQKKKS---GISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMV
        MA+    +K FYKQ K +   GISK     SKPSSRK  +P ++A  GS   QPAALISHG +DL                          DY + E M+
Subjt:  MASVRGGMKDFYKQKKKS---GISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMV

Query:  RQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        RQFDMN+ YGPCLGMTR++RWERA  LG+NPP +IE LLK GKVQ +CLW  RV
Subjt:  RQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAGTTACTGTTGTGGAGTTTGTGCCTCGCGATT
GTGATTTGATTAAGCATAGAGTCAAGAGGTTGTGGGATACCAATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTT
GGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTG
GGATTCCCGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAAGAAAAAGAGTGGAATCTCCAAACCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCAAACTCCGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTTCCTGGATCTTCAAGTTACTGTTGTGGAGTTTGTGCCTCGCGATT
GTGATTTGATTAAGCATAGAGTCAAGAGGTTGTGGGATACCAATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTT
GGAATGACCAGAATGGAACGGTGGGAGCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTG
GGATTCCCGAGTTTAA
Protein sequenceShow/hide protein sequence
MASVRGGMKDFYKQKKKSGISKPNNKASKPSSRKTKSPANSATLGSGGVQPAALISHGFLDLQVTVVEFVPRDCDLIKHRVKRLWDTNDYGESENMVRQFDMNMAYGPCL
GMTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV