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Spg019024 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019024
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:23904454..23905537
RNA-Seq ExpressionSpg019024
SyntenySpg019024
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-1343.94Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG
        MTEILS RLYGT+CTQ                 VEIELPVPDTLPTSAESS S+S       V             + EDDVCWLHA+   K AG  GGG
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG

Query:  VIKCQTDQ-------VLKQPTLGNPRDGVETP
        V+   T +        ++ PT G    G  TP
Subjt:  VIKCQTDQ-------VLKQPTLGNPRDGVETP

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.7e-1141.48Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS---------------LEEDDVCWLHAISLTKLAGSL
        MTEILS RL+GT+CTQ                 VEIELPVPDTLPTS ESS S+S     Q +S               +  DDVCWLHA+   K  G  
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS---------------LEEDDVCWLHAISLTKLAGSL

Query:  GGGVIKCQTDQVLKQ-------PTLGNPRDGVETP
         GGV+  +T +  KQ       PT G    G  TP
Subjt:  GGGVIKCQTDQVLKQ-------PTLGNPRDGVETP

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]7.9e-1138.64Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSM-------------------IQQGQQVSLEEDDVCWLHAISLTKL
        MTEILS +LY T+CT                  VEIELPVPDTLPTSAES + + +                   +  G    +  DDVCWLHA+   K+
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSM-------------------IQQGQQVSLEEDDVCWLHAISLTKL

Query:  AGSLGGGVIKCQTDQVLKQPTLGNPRDGVETP
        AGS  GGV   Q     + PT G    G  TP
Subjt:  AGSLGGGVIKCQTDQVLKQPTLGNPRDGVETP

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]7.2e-1244.54Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVIKCQTDQVLKQ
        MTEILS RLYGT+CTQ                 VEIELPV DTLPTSAESS S+S         +  DDVCWLH++   K A   GGGV      +V+ +
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVIKCQTDQVLKQ

Query:  PTLGNPR---DGVETPSSG
         T    R   DG++ P+ G
Subjt:  PTLGNPR---DGVETPSSG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-1343.94Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG
        MTEILS RLYGT+CTQ                 VEIELPVPDTLPTSAESS S+S       V             + EDDVCWLHA+   K AG  GGG
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG

Query:  VIKCQTDQ-------VLKQPTLGNPRDGVETP
        V+   T +        ++ PT G    G  TP
Subjt:  VIKCQTDQ-------VLKQPTLGNPRDGVETP

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase1.8e-1343.94Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG
        MTEILS RLYGT+CTQ                 VEIELPVPDTLPTSAESS S+S       V             + EDDVCWLHA+   K AG  GGG
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG

Query:  VIKCQTDQ-------VLKQPTLGNPRDGVETP
        V+   T +        ++ PT G    G  TP
Subjt:  VIKCQTDQ-------VLKQPTLGNPRDGVETP

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.3e-1141.48Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS---------------LEEDDVCWLHAISLTKLAGSL
        MTEILS RL+GT+CTQ                 VEIELPVPDTLPTS ESS S+S     Q +S               +  DDVCWLHA+   K  G  
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS---------------LEEDDVCWLHAISLTKLAGSL

Query:  GGGVIKCQTDQVLKQ-------PTLGNPRDGVETP
         GGV+  +T +  KQ       PT G    G  TP
Subjt:  GGGVIKCQTDQVLKQ-------PTLGNPRDGVETP

A0A5D3C0X3 Retrotrans_gag domain-containing protein3.8e-1138.64Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSM-------------------IQQGQQVSLEEDDVCWLHAISLTKL
        MTEILS +LY T+CT                  VEIELPVPDTLPTSAES + + +                   +  G    +  DDVCWLHA+   K+
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSM-------------------IQQGQQVSLEEDDVCWLHAISLTKL

Query:  AGSLGGGVIKCQTDQVLKQPTLGNPRDGVETP
        AGS  GGV   Q     + PT G    G  TP
Subjt:  AGSLGGGVIKCQTDQVLKQPTLGNPRDGVETP

A0A5D3CU23 Retrotrans_gag domain-containing protein3.5e-1244.54Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVIKCQTDQVLKQ
        MTEILS RLYGT+CTQ                 VEIELPV DTLPTSAESS S+S         +  DDVCWLH++   K A   GGGV      +V+ +
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVIKCQTDQVLKQ

Query:  PTLGNPR---DGVETPSSG
         T    R   DG++ P+ G
Subjt:  PTLGNPR---DGVETPSSG

A0A5D3DX39 Reverse transcriptase1.8e-1343.94Show/hide
Query:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG
        MTEILS RLYGT+CTQ                 VEIELPVPDTLPTSAESS S+S       V             + EDDVCWLHA+   K AG  GGG
Subjt:  MTEILSSRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSSSSSMIQQGQQVS------------LEEDDVCWLHAISLTKLAGSLGGG

Query:  VIKCQTDQ-------VLKQPTLGNPRDGVETP
        V+   T +        ++ PT G    G  TP
Subjt:  VIKCQTDQ-------VLKQPTLGNPRDGVETP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAG
CTCCATGATTCAGCAGGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGATCA
AGTGCCAAACGGATCAAGTTTTGAAGCAGCCCACTCTTGGAAACCCGAGAGATGGCGTCGAGACGCCATCTTCCGGTGTCGAGACGCTCCGAATGCAGGACCGCGAAAAT
CAACGTCAGCGTCTCGACGCCGGCTACGGCGTCTCAACGCCAGTCCGTCTTTTTAAATATCGCGGCTGCGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAG
CTCCATGATTCAGCAGGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGATCA
AGTGCCAAACGGATCAAGTTTTGAAGCAGCCCACTCTTGGAAACCCGAGAGATGGCGTCGAGACGCCATCTTCCGGTGTCGAGACGCTCCGAATGCAGGACCGCGAAAAT
CAACGTCAGCGTCTCGACGCCGGCTACGGCGTCTCAACGCCAGTCCGTCTTTTTAAATATCGCGGCTGCGATTAG
Protein sequenceShow/hide protein sequence
MTEILSSRLYGTMCTQVEIELPVPDTLPTSAESSSSSSMIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVIKCQTDQVLKQPTLGNPRDGVETPSSGVETLRMQDREN
QRQRLDAGYGVSTPVRLFKYRGCD