; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019027 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019027
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold12:24685561..24702044
RNA-Seq ExpressionSpg019027
SyntenySpg019027
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1226.67Show/hide
Query:  SFWNDSWLNGGILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSW-LHPSRIFSI----KSIMDDR
        SFW+  W     L++ +P LY L+TN  +++ ++W  +   W+ +PRR L E E   WA+L + L+++     NDS  W L+ + ++++    K++    
Subjt:  SFWNDSWLNGGILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSW-LHPSRIFSI----KSIMDDR

Query:  LNIPDTTPNNQDSVIWKDSSPKKIKIFLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYW
         N+ D    N    +WK S PKK   F+  L   ++  +     +  +L              E+ +HLF+ C  A   W
Subjt:  LNIPDTTPNNQDSVIWKDSSPKKIKIFLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYW

KAA0059738.1 hypothetical protein E6C27_scaffold551G00160 [Cucumis melo var. makuwa]2.8e-1637.06Show/hide
Query:  LAILPPSSSSTGPPNSKNQSPKATFPIPAQQQTSSLDLPSLSLPMYLSHLAPLL--------TPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLF
        L + PP++  +  P   N + +   P P+      +   S   P+ L  +A +L        +   IGW +LD++GTSGG  I+W  LDFT+ + IQGL+
Subjt:  LAILPPSSSSTGPPNSKNQSPKATFPIPAQQQTSSLDLPSLSLPMYLSHLAPLL--------TPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLF

Query:  SVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG
        ++SIH+ M D FSF L+ +Y P+   +  DFW EL +LA LGG
Subjt:  SVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.4e-1226.67Show/hide
Query:  SFWNDSWLNGGILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSW-LHPSRIFSI----KSIMDDR
        SFW+  W     L++ +P LY L+TN  +++ ++W  +   W+ +PRR L E E   WA+L + L+++     NDS  W L+ + ++++    K++    
Subjt:  SFWNDSWLNGGILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSW-LHPSRIFSI----KSIMDDR

Query:  LNIPDTTPNNQDSVIWKDSSPKKIKIFLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYW
         N+ D    N    +WK S PKK   F+  L   ++  +     +  +L              E+ +HLF+ C  A   W
Subjt:  LNIPDTTPNNQDSVIWKDSSPKKIKIFLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYW

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.4e-1244.58Show/hide
Query:  LLTPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG
        L +  +I W+SLD+ G SGGI ++W +L  +  E I G FS+S+H  +AD F++WLT +Y P +++    FWQEL DL  L G
Subjt:  LLTPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]3.8e-1349.33Show/hide
Query:  IGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASL
        I WS+LD+ G + GI I+W++ D    E I+G+FS++I+  ++DGF FW++ IYGP+  EFH  FWQEL DL+ L
Subjt:  IGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASL

TrEMBL top hitse value%identityAlignment
A0A0A0LW63 Uncharacterized protein1.4e-1352.24Show/hide
Query:  SGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGGD
        SGGI I+W   + T+ E + G++++SIH+ +ADGFSFW + +YGP    FH DFW ELHD+A LGG+
Subjt:  SGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGGD

A0A5D3CGF9 Uncharacterized protein1.3e-1637.06Show/hide
Query:  LAILPPSSSSTGPPNSKNQSPKATFPIPAQQQTSSLDLPSLSLPMYLSHLAPLL--------TPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLF
        L + PP++  +  P   N + +   P P+      +   S   P+ L  +A +L        +   IGW +LD++GTSGG  I+W  LDFT+ + IQGL+
Subjt:  LAILPPSSSSTGPPNSKNQSPKATFPIPAQQQTSSLDLPSLSLPMYLSHLAPLL--------TPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLF

Query:  SVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG
        ++SIH+ M D FSF L+ +Y P+   +  DFW EL +LA LGG
Subjt:  SVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.2e-1226.67Show/hide
Query:  SFWNDSWLNGGILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSW-LHPSRIFSI----KSIMDDR
        SFW+  W     L++ +P LY L+TN  +++ ++W  +   W+ +PRR L E E   WA+L + L+++     NDS  W L+ + ++++    K++    
Subjt:  SFWNDSWLNGGILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSW-LHPSRIFSI----KSIMDDR

Query:  LNIPDTTPNNQDSVIWKDSSPKKIKIFLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYW
         N+ D    N    +WK S PKK   F+  L   ++  +     +  +L              E+ +HLF+ C  A   W
Subjt:  LNIPDTTPNNQDSVIWKDSSPKKIKIFLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYW

A0A6J1CVN2 uncharacterized protein LOC1110146571.2e-1244.58Show/hide
Query:  LLTPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG
        L +  +I W+SLD+ G SGGI ++W +L  +  E I G FS+S+H  +AD F++WLT +Y P +++    FWQEL DL  L G
Subjt:  LLTPCNIGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGG

A0A6J1E2G6 uncharacterized protein LOC1110254051.8e-1349.33Show/hide
Query:  IGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASL
        I WS+LD+ G + GI I+W++ D    E I+G+FS++I+  ++DGF FW++ IYGP+  EFH  FWQEL DL+ L
Subjt:  IGWSSLDSVGTSGGIFIMWSELDFTLKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGGATCCTTCACAAATTATTGAGAGAAAATCACCGCTTAATGGGAGCCATCCACGATTTATTGCTGATTCAAATAAGGTCGTTAGTCCGATGCTTTCCATTAA
CGCAAAAAAAGGGAAGGAGCCAATAGAAGTGAGTGAATCACTGATGAAAAACTTCGAGAATATATCTTTTGGTGGGCCCACAAATTTGAAGATCTCTCACAAAGGATCAA
CATCTGGAATTACACCAAATTTGGCTGTATTGGGCTTTGATACCGAGGCCTATCTTTCTAGCCCATCAGTTGATCATTCGCCTCACCCAACTAGAATGGACCCTCTCCCA
CCACAAGATTACAATCTTACGGTTTTTGATGACCCACAACCTCTCGAGAATTCAACCCTCCCTGATGATCATCATCTTCTCTTAGCCATTTTACCGCCATCATCATCATC
TACTGGCCCACCGAACTCCAAGAACCAATCGCCTAAAGCAACTTTCCCCATACCCGCCCAACAACAGACCTCTTCCCTTGATTTGCCATCGCTCTCCCTCCCAATGTATC
TCAGTCATTTAGCTCCTCTACTGACTCCTTGCAATATTGGTTGGTCTTCTCTCGATTCTGTTGGAACATCTGGGGGCATCTTTATTATGTGGAGTGAATTGGACTTCACT
TTAAAAGAGACTATTCAAGGTCTTTTCTCTGTCTCTATTCATGTTTTTATGGCTGATGGTTTTTCTTTTTGGCTTACAAATATTTATGGCCCTACTCGGCGTGAATTCCA
TGCTGATTTTTGGCAAGAATTACATGATCTGGCCAGTTTAGGAGGCGATACCCTTTTGTCCTCTACTTTTGATTCAGAAGCTATGATTAAGCTGTTTGAAGTTATCAGAA
TTTTTGAATTGGCTTCTGGTCTGAATATATGGTTGCCAGTCGGGTACATCGGAATATTGGTAACGACCAACGTACTGTCTTTTTGGAATGACTCTTGGTTGAATGGTGGG
ATCCTTGCAACACTTTTTCCACTCCTATATCGTTTAACCACCAATTCAAATGCTACGGTTGCAGAAGTTTGGACTACATCACAATCGGCGTGGAATCGTAGCCCTCGTCG
TCATCTTAATGAGCTTGAAACTATTGAATGGGCACAACTTTCTCATCTACTGTCTTCTACTAGATTACGGGAAATGAACGATTCTTGGTCTTGGCTTCATCCATCTAGGA
TATTTTCAATTAAATCTATTATGGATGACCGGTTGAATATTCCTGATACCACTCCAAACAATCAGGACTCGGTAATATGGAAAGATAGTTCTCCTAAAAAGATAAAAATC
TTTCTGCGGGAGCTTAGTCTTGGGGCTATTAAACACAGCGGACCGTCTTCAACAAAGAATGCCTCACTTTCACCTCTTGCCATCTTGGTGTATTATGTGCTCATCAAACA
TGAGAACCCGGTTCATCTTTTTGTTACGTGTTCTTTTGCTTCTAGATATTGGGCCTTCATGATTGATGCTTTTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGGATCCTTCACAAATTATTGAGAGAAAATCACCGCTTAATGGGAGCCATCCACGATTTATTGCTGATTCAAATAAGGTCGTTAGTCCGATGCTTTCCATTAA
CGCAAAAAAAGGGAAGGAGCCAATAGAAGTGAGTGAATCACTGATGAAAAACTTCGAGAATATATCTTTTGGTGGGCCCACAAATTTGAAGATCTCTCACAAAGGATCAA
CATCTGGAATTACACCAAATTTGGCTGTATTGGGCTTTGATACCGAGGCCTATCTTTCTAGCCCATCAGTTGATCATTCGCCTCACCCAACTAGAATGGACCCTCTCCCA
CCACAAGATTACAATCTTACGGTTTTTGATGACCCACAACCTCTCGAGAATTCAACCCTCCCTGATGATCATCATCTTCTCTTAGCCATTTTACCGCCATCATCATCATC
TACTGGCCCACCGAACTCCAAGAACCAATCGCCTAAAGCAACTTTCCCCATACCCGCCCAACAACAGACCTCTTCCCTTGATTTGCCATCGCTCTCCCTCCCAATGTATC
TCAGTCATTTAGCTCCTCTACTGACTCCTTGCAATATTGGTTGGTCTTCTCTCGATTCTGTTGGAACATCTGGGGGCATCTTTATTATGTGGAGTGAATTGGACTTCACT
TTAAAAGAGACTATTCAAGGTCTTTTCTCTGTCTCTATTCATGTTTTTATGGCTGATGGTTTTTCTTTTTGGCTTACAAATATTTATGGCCCTACTCGGCGTGAATTCCA
TGCTGATTTTTGGCAAGAATTACATGATCTGGCCAGTTTAGGAGGCGATACCCTTTTGTCCTCTACTTTTGATTCAGAAGCTATGATTAAGCTGTTTGAAGTTATCAGAA
TTTTTGAATTGGCTTCTGGTCTGAATATATGGTTGCCAGTCGGGTACATCGGAATATTGGTAACGACCAACGTACTGTCTTTTTGGAATGACTCTTGGTTGAATGGTGGG
ATCCTTGCAACACTTTTTCCACTCCTATATCGTTTAACCACCAATTCAAATGCTACGGTTGCAGAAGTTTGGACTACATCACAATCGGCGTGGAATCGTAGCCCTCGTCG
TCATCTTAATGAGCTTGAAACTATTGAATGGGCACAACTTTCTCATCTACTGTCTTCTACTAGATTACGGGAAATGAACGATTCTTGGTCTTGGCTTCATCCATCTAGGA
TATTTTCAATTAAATCTATTATGGATGACCGGTTGAATATTCCTGATACCACTCCAAACAATCAGGACTCGGTAATATGGAAAGATAGTTCTCCTAAAAAGATAAAAATC
TTTCTGCGGGAGCTTAGTCTTGGGGCTATTAAACACAGCGGACCGTCTTCAACAAAGAATGCCTCACTTTCACCTCTTGCCATCTTGGTGTATTATGTGCTCATCAAACA
TGAGAACCCGGTTCATCTTTTTGTTACGTGTTCTTTTGCTTCTAGATATTGGGCCTTCATGATTGATGCTTTTGGTTGA
Protein sequenceShow/hide protein sequence
MPKDPSQIIERKSPLNGSHPRFIADSNKVVSPMLSINAKKGKEPIEVSESLMKNFENISFGGPTNLKISHKGSTSGITPNLAVLGFDTEAYLSSPSVDHSPHPTRMDPLP
PQDYNLTVFDDPQPLENSTLPDDHHLLLAILPPSSSSTGPPNSKNQSPKATFPIPAQQQTSSLDLPSLSLPMYLSHLAPLLTPCNIGWSSLDSVGTSGGIFIMWSELDFT
LKETIQGLFSVSIHVFMADGFSFWLTNIYGPTRREFHADFWQELHDLASLGGDTLLSSTFDSEAMIKLFEVIRIFELASGLNIWLPVGYIGILVTTNVLSFWNDSWLNGG
ILATLFPLLYRLTTNSNATVAEVWTTSQSAWNRSPRRHLNELETIEWAQLSHLLSSTRLREMNDSWSWLHPSRIFSIKSIMDDRLNIPDTTPNNQDSVIWKDSSPKKIKI
FLRELSLGAIKHSGPSSTKNASLSPLAILVYYVLIKHENPVHLFVTCSFASRYWAFMIDAFG