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Spg019030 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019030
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:24067426..24068462
RNA-Seq ExpressionSpg019030
SyntenySpg019030
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]9.0e-2456.92Show/hide
Query:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS  LYGTVCTQ                 VEIELPV DTL   AES  S+SSYF NQVMSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGDVGSVQIELAEYGPSIVESESSRD
        AGGPGG+  +   +         ++ES RD
Subjt:  AGGPGGDVGSVQIELAEYGPSIVESESSRD

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]5.3e-2465.38Show/hide
Query:  MTEILSPMLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILS  LYGTVCTQV+IELP+PDTLPTSAESS S+ +                YF NQVMSGLH V    F+VS+GSTGIVRGDDVCWLHAVFR K A
Subjt:  MTEILSPMLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPG
          PG
Subjt:  GGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-2064.21Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-2175.95Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVC LH VFRAK AGGPGG V  V+
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]9.6e-2665.74Show/hide
Query:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS  L+GTVCTQ                 VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGDV
         GGP G V
Subjt:  AGGPGGDV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.6e-2465.38Show/hide
Query:  MTEILSPMLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILS  LYGTVCTQV+IELP+PDTLPTSAESS S+ +                YF NQVMSGLH V    F+VS+GSTGIVRGDDVCWLHAVFR K A
Subjt:  MTEILSPMLYGTVCTQVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPG
          PG
Subjt:  GGPG

A0A5A7V9N3 Reverse transcriptase1.7e-2064.21Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.6e-2175.95Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVC LH VFRAK AGGPGG V  V+
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ

A0A5D3BMJ4 Retrotrans_gag domain-containing protein4.7e-2665.74Show/hide
Query:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS  L+GTVCTQ                 VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGDV
         GGP G V
Subjt:  AGGPGGDV

A0A5D3DIE3 Retrotrans_gag domain-containing protein4.4e-2456.92Show/hide
Query:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL
        MTEILS  LYGTVCTQ                 VEIELPV DTL   AES  S+SSYF NQVMSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK 
Subjt:  MTEILSPMLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGDVGSVQIELAEYGPSIVESESSRD
        AGGPGG+  +   +         ++ES RD
Subjt:  AGGPGGDVGSVQIELAEYGPSIVESESSRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGATGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTCGAGAGTGAGTCC
AGTCGGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGATGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTCGAGAGTGAGTCC
AGTCGGGACTAG
Protein sequenceShow/hide protein sequence
MTEILSPMLYGTVCTQVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYGPSIVESES
SRD