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Spg019038 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019038
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA-directed DNA polymerase-like protein
Genome locationscaffold12:25431544..25433557
RNA-Seq ExpressionSpg019038
SyntenySpg019038
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025163.1 hypothetical protein E6C27_scaffold2405G00100 [Cucumis melo var. makuwa]5.3e-1763.92Show/hide
Query:  VYKSNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG
        V+KSNQKLYLV            PRGNRSSLQTGELDKT             PL TLSVL DNDAVVE ELPVPDTLPTSAES  S+SR S G+VRG
Subjt:  VYKSNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]7.4e-1955.65Show/hide
Query:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV
        +YK NQKLYLVSC VFENEEF                           ++PRGNR SLQTGELDKT             PL TLSVLRDNDAVVEIELP 
Subjt:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV

Query:  PDTLPTSAESSRSSS
        P+ LPTSAESSRS+S
Subjt:  PDTLPTSAESSRSSS

KAA0056731.1 hypothetical protein E6C27_scaffold29G00280 [Cucumis melo var. makuwa]2.4e-1759.18Show/hide
Query:  VYKSNQKLYL---VSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVV
        ++KS QKLYL   +  R+   E  ++PRGNRSSLQTGELDKT             PL  LSVLRDNDA+VEIELPVPDTLPTSAE+S+S+SR S G++
Subjt:  VYKSNQKLYL---VSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVV

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]1.3e-1852.42Show/hide
Query:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV
        V++SNQ LYLVSCRVF +E+F                           ++PRGNRSSLQTG+LDKT             PL  LSVLRDND VVEIELPV
Subjt:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV

Query:  PDTLPTSAESSRSSSRGSTGVVRG
        PDT PTSAESS S+S  S G+VRG
Subjt:  PDTLPTSAESSRSSSRGSTGVVRG

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.0e-2051.97Show/hide
Query:  HLRERVKEEEEEDFRGLVLKKIGKAPAKPAIAESGIFEQIRRISGVLWCFEHSGVYKSNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDKTPEAIWY
        H  ERVKEEEEE FR   ++K  +  +    ++ G F        +        V+KSNQKLYL      ++ ++DV PRGNRSSLQTGELDKT   +  
Subjt:  HLRERVKEEEEEDFRGLVLKKIGKAPAKPAIAESGIFEQIRRISGVLWCFEHSGVYKSNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDKTPEAIWY

Query:  RVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG
                L TLSVLRDNDAVVEIELPVPD LPTSA+SS S+S GSTG+VRG
Subjt:  RVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG

TrEMBL top hitse value%identityAlignment
A0A5A7SKG8 Uncharacterized protein2.6e-1763.92Show/hide
Query:  VYKSNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG
        V+KSNQKLYLV            PRGNRSSLQTGELDKT             PL TLSVL DNDAVVE ELPVPDTLPTSAES  S+SR S G+VRG
Subjt:  VYKSNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG

A0A5A7UFD2 Uncharacterized protein3.6e-1955.65Show/hide
Query:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV
        +YK NQKLYLVSC VFENEEF                           ++PRGNR SLQTGELDKT             PL TLSVLRDNDAVVEIELP 
Subjt:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV

Query:  PDTLPTSAESSRSSS
        P+ LPTSAESSRS+S
Subjt:  PDTLPTSAESSRSSS

A0A5D3BQ75 Uncharacterized protein6.1e-1952.42Show/hide
Query:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV
        V++SNQ LYLVSCRVF +E+F                           ++PRGNRSSLQTG+LDKT             PL  LSVLRDND VVEIELPV
Subjt:  VYKSNQKLYLVSCRVFENEEF---------------------------DVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPV

Query:  PDTLPTSAESSRSSSRGSTGVVRG
        PDT PTSAESS S+S  S G+VRG
Subjt:  PDTLPTSAESSRSSSRGSTGVVRG

A0A5D3BZ50 Pentatricopeptide repeat-containing protein1.5e-2051.97Show/hide
Query:  HLRERVKEEEEEDFRGLVLKKIGKAPAKPAIAESGIFEQIRRISGVLWCFEHSGVYKSNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDKTPEAIWY
        H  ERVKEEEEE FR   ++K  +  +    ++ G F        +        V+KSNQKLYL      ++ ++DV PRGNRSSLQTGELDKT   +  
Subjt:  HLRERVKEEEEEDFRGLVLKKIGKAPAKPAIAESGIFEQIRRISGVLWCFEHSGVYKSNQKLYLVSCRVFENEEFDV-PRGNRSSLQTGELDKTPEAIWY

Query:  RVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG
                L TLSVLRDNDAVVEIELPVPD LPTSA+SS S+S GSTG+VRG
Subjt:  RVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRG

A0A5D3DCA4 Uncharacterized protein1.1e-1759.18Show/hide
Query:  VYKSNQKLYL---VSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVV
        ++KS QKLYL   +  R+   E  ++PRGNRSSLQTGELDKT             PL  LSVLRDNDA+VEIELPVPDTLPTSAE+S+S+SR S G++
Subjt:  VYKSNQKLYL---VSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTGGTGTTGAAGAAGATAGGAAAAGCTCCTGCAAAGCCAGCCATAGCAGAATCTGGGATTTT
CGAGCAAATTAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAG
AGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACG
TTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGAGGGTCAACGGG
TGTCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCAGGCTAA
mRNA sequenceShow/hide mRNA sequence
CACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTGGTGTTGAAGAAGATAGGAAAAGCTCCTGCAAAGCCAGCCATAGCAGAATCTGGGATTTT
CGAGCAAATTAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAG
AGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACG
TTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGAGGGTCAACGGG
TGTCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCAGGCTAA
Protein sequenceShow/hide protein sequence
HLRERVKEEEEEDFRGLVLKKIGKAPAKPAIAESGIFEQIRRISGVLWCFEHSGVYKSNQKLYLVSCRVFENEEFDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLT
LSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSTGVVRGGRCPLASRHLPG