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Spg019065 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019065
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:50108029..50115469
RNA-Seq ExpressionSpg019065
SyntenySpg019065
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]1.2e-1261.04Show/hide
Query:  ISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        +   ISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAES  S+SSTWLELY ESV +
Subjt:  ISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.6e-1278.43Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAES  S+ +TWLELY ESV +
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1164.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAES  S+SSTWLELY+E V +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.5e-1350Show/hide
Query:  KDHGLQRFEKNRGEARIPQKCNCISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        + HG++       E R+  +   +   +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESV +
Subjt:  KDHGLQRFEKNRGEARIPQKCNCISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1164.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAES  S+SSTWLELY+E V +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein5.9e-1361.04Show/hide
Query:  ISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        +   ISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAES  S+SSTWLELY ESV +
Subjt:  ISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
A0A5A7V638 Uncharacterized protein1.7e-1278.43Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAES  S+ +TWLELY ESV +
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
A0A5A7VMG9 Reverse transcriptase6.5e-1264.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAES  S+SSTWLELY+E V +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.7e-1350Show/hide
Query:  KDHGLQRFEKNRGEARIPQKCNCISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        + HG++       E R+  +   +   +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESV +
Subjt:  KDHGLQRFEKNRGEARIPQKCNCISGKISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
A0A5D3DX39 Reverse transcriptase6.5e-1264.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAES  S+SSTWLELY+E V +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESPRSSSSTWLELYIESVRI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCAACAACAAGAGTTGCTGCGCAAACAACAAGAAGAATTATCCACTCGCGTGAACTCTCTAGTCCTCTTCTTGTTGCGATGGACTAAATCTTTTGGCCCCTTGCC
CGTCACACCAAATCTCTTCATGCGGCCAGCTGCGCAACAAAGACCAAATGGCGCAGGCCCATCTCAGATGCGCCCTCCCAGAGCCCCTCCTGCACTAGGATATTTAATTG
GTTTAACCTCTGTTTTCATTTCGTCAGACCTTAAGGAAAATCCCTTCGCATTTTCGCCGTGTCGCAACTCAACCTTGATCTCCTTAAGTCTATGCTCTCCAGTGGGCATT
TATGACACCCATAGTTTGCCACTGTGCGAAGATGCAACCACATTCCATGAGCGTATAAGACAAAAAAAATGTAATGCCCGTAGTTGGATACCTTTCATCACAAAGGCGAG
GGGACCTAATGGACCTAAAGATCATGGGCTCCAACGATTCGAGAAAAACAGAGGAGAAGCTAGAATTCCCCAGAAATGCAACTGTATTTCTGGGAAGATTTCTATTGACT
ACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTCCTAGATCA
AGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCGCATTGCAAATGTTTTGCAAGGATTGGATAATATCGTCCTAGAGGTCGTGGTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCCAACAACAAGAGTTGCTGCGCAAACAACAAGAAGAATTATCCACTCGCGTGAACTCTCTAGTCCTCTTCTTGTTGCGATGGACTAAATCTTTTGGCCCCTTGCC
CGTCACACCAAATCTCTTCATGCGGCCAGCTGCGCAACAAAGACCAAATGGCGCAGGCCCATCTCAGATGCGCCCTCCCAGAGCCCCTCCTGCACTAGGATATTTAATTG
GTTTAACCTCTGTTTTCATTTCGTCAGACCTTAAGGAAAATCCCTTCGCATTTTCGCCGTGTCGCAACTCAACCTTGATCTCCTTAAGTCTATGCTCTCCAGTGGGCATT
TATGACACCCATAGTTTGCCACTGTGCGAAGATGCAACCACATTCCATGAGCGTATAAGACAAAAAAAATGTAATGCCCGTAGTTGGATACCTTTCATCACAAAGGCGAG
GGGACCTAATGGACCTAAAGATCATGGGCTCCAACGATTCGAGAAAAACAGAGGAGAAGCTAGAATTCCCCAGAAATGCAACTGTATTTCTGGGAAGATTTCTATTGACT
ACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTCCTAGATCA
AGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCGCATTGCAAATGTTTTGCAAGGATTGGATAATATCGTCCTAGAGGTCGTGGTTGTATAA
Protein sequenceShow/hide protein sequence
MCQQQELLRKQQEELSTRVNSLVLFLLRWTKSFGPLPVTPNLFMRPAAQQRPNGAGPSQMRPPRAPPALGYLIGLTSVFISSDLKENPFAFSPCRNSTLISLSLCSPVGI
YDTHSLPLCEDATTFHERIRQKKCNARSWIPFITKARGPNGPKDHGLQRFEKNRGEARIPQKCNCISGKISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESPRS
SSSTWLELYIESVRIANVLQGLDNIVLEVVVV