CuGenDBv2

Gene ID	Spg019070
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein SKIP5
Genome location	scaffold1:45097775..45103288
RNA-Seq Expression	Spg019070
Synteny	Spg019070
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004142419.1 F-box protein SKIP5 isoform X1 [Cucumis sativus]

5.1e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

XP_008446937.1 PREDICTED: F-box protein SKIP5 [Cucumis melo]

5.1e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

XP_011655907.1 F-box protein SKIP5 isoform X2 [Cucumis sativus]

5.1e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

XP_022139176.1 F-box protein SKIP5 [Momordica charantia]

5.1e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

XP_038889674.1 F-box protein SKIP5 [Benincasa hispida]

5.1e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRR7 F-box domain-containing protein

2.5e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

A0A1S3BG99 F-box protein SKIP5

2.5e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

A0A5A7SZI1 F-box protein SKIP5

2.5e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

A0A6J1CBW5 F-box protein SKIP5

2.5e-14

64.86

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFCT G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

A0A6J1G1V1 F-box protein SKIP5-like

9.4e-14

63.51

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Query:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        V R ++ +    + F  + A + A  PGDTILIATGG HSASNIQITKPLCLIGGGELPEETTLFC+ G E  L
Subjt:  VRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

SwissProt top hits

e value

%identity

Alignment

Q94FT2 F-box protein SKIP5

4.7e-10

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Query:  FRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        F  + + + A  PGDTILI  GG +  SNIQI KPLCL+GGGE+P+ETTL C  G +  L
Subjt:  FRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

Arabidopsis top hits

e value

%identity

Alignment

AT3G54480.1 SKP1/ASK-interacting protein 5

3.3e-11

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Query:  FRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL
        F  + + + A  PGDTILI  GG +  SNIQI KPLCL+GGGE+P+ETTL C  G +  L
Subjt:  FRPLGAGLFAMLPGDTILIATGG-HSASNIQITKPLCLIGGGELPEETTLFCTCGLERCL

Sequences

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CDS sequence

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ATGTTTGCCTTCATTTGCGTTGCTTATTGTGTTCGCCGTCGTCTGCAGTCGATTGACAGGGTTTCCATTCGTTTCAGACCATTAGGTGCTGGTTTATTTGCTATGTTGCC
TGGCGATACAATACTAATTGCAACAGGAGGTCATTCTGCCTCTAATATTCAAATAACAAAACCACTTTGTCTGATTGGTGGTGGTGAACTTCCGGAGGAGACTACACTTT
TCTGTACTTGTGGTTTGGAAAGGTGTTTATTAGAGGAGAACTGGTCCATTAGGTCCCACTGGGCCTTCGTCCCTACAAAAGGTTGCATGGATGAATCATCTATGTCGGAG
TCGGGTCACAGACATAACTTGGAGATCCAAGTAAGGCAATTGATAGAGGAATTGATAAATAGTCGACAAGAAATCTTGCCTGACAACAAAGAGAATGTGGAACAAGAAGC
ACAAAAGCAATACAAGGGGATGACATTTCAAAGTAGATTGGAGCATAAAGACCATGAACTCCTAGTAGAAGCAAGAAGCATGCCAACACTTGAAAATACTGAGGAGATAA
ATGAAAGAGAAAAGATTAAAGAAGAATCGCCTAAAAAAGAGAATAAAGTGAAGACACCAGAGAAAGAAGTTGCAGTAAGCCATGCGGATGCAACTTCACAACAAATGAAT
TTTGATGTGCTGCAGACATTACAACACCCTGATGAAATAAAAGGGTGTTTTGCTTTTGAACCTATTGATTCGTTTACTTGTTGTAACTTGCAGGAAATTTTAGAAAAAGA
AAGATTCAAGGAAGAAATAAAAGAGGAAGACATGGAGGATGAGAATTTGCAATATGCGACAGAAGATGAGACTGTAAATTTTGTATTCAAAAGTAGATTGAGTGAATTGA
TAACAGAGACTAAGTACTCCATGATTAAAACACCTCAATTAAGACTCAAATCTCGTCCGTTATCAAGACCTAGAGTCAAGATGAAAGTTTGTGACCCAAGAAGTAGGAAT
AAAGCTTTAATCTCCTTGCTGGAGATCAACTAA

mRNA sequence

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Protein sequence

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MFAFICVAYCVRRRLQSIDRVSIRFRPLGAGLFAMLPGDTILIATGGHSASNIQITKPLCLIGGGELPEETTLFCTCGLERCLLEENWSIRSHWAFVPTKGCMDESSMSE
SGHRHNLEIQVRQLIEELINSRQEILPDNKENVEQEAQKQYKGMTFQSRLEHKDHELLVEARSMPTLENTEEINEREKIKEESPKKENKVKTPEKEVAVSHADATSQQMN
FDVLQTLQHPDEIKGCFAFEPIDSFTCCNLQEILEKERFKEEIKEEDMEDENLQYATEDETVNFVFKSRLSELITETKYSMIKTPQLRLKSRPLSRPRVKMKVCDPRSRN
KALISLLEIN

Spg019070 (gene) of Sponge gourd (cylindrica) v1 genome