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Spg019086 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019086
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:42137884..42139670
RNA-Seq ExpressionSpg019086
SyntenySpg019086
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-1761.63Show/hide
Query:  YLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHVIFRAKLAGGPGGGVT
        +LVEIELPVPD LPTSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        DDV WLH IFRAK AGGPGGGVT
Subjt:  YLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHVIFRAKLAGGPGGGVT

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-1850.88Show/hide
Query:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI
        +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLH +
Subjt:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI

Query:  FRAKLAGGPGGGVT
        FRAK AGGPGGGVT
Subjt:  FRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1756.18Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLH +FRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-1850.88Show/hide
Query:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI
        +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLH +
Subjt:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI

Query:  FRAKLAGGPGGGVT
        FRAK AGGPGGGVT
Subjt:  FRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-1756.18Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLH +FRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase3.4e-1850.88Show/hide
Query:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI
        +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLH +
Subjt:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI

Query:  FRAKLAGGPGGGVT
        FRAK AGGPGGGVT
Subjt:  FRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase5.8e-1856.18Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLH +FRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT

A0A5D3BTP3 Reverse transcriptase9.9e-1861.63Show/hide
Query:  YLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHVIFRAKLAGGPGGGVT
        +LVEIELPVPD LPTSAESSR++SSTW+ELY ESVH+     V+   +  Q   L        DDV WLH IFRAK AGGPGGGVT
Subjt:  YLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------EEDDVRWLHVIFRAKLAGGPGGGVT

A0A5D3D150 Reverse transcriptase3.4e-1850.88Show/hide
Query:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI
        +KSNQKLYL                 VEIELPVPDTLPTSAES  ++SSTW+ELY ESVH+             ++++ NV  G    +  DDV WLH +
Subjt:  YKSNQKLYL-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVI

Query:  FRAKLAGGPGGGVT
        FRAK AGGPGGGVT
Subjt:  FRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein5.8e-1856.18Show/hide
Query:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLH +FRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTGTGGGGCGTACAAGTCGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAG
AGGAGGACGATGTTCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGACATTTGCATGAAATTGATGCAACTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTGTGGGGCGTACAAGTCGAATCAGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAG
AGGAGGACGATGTTCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAAGACATTTGCATGAAATTGATGCAACTTTCTGA
Protein sequenceShow/hide protein sequence
MISGVLWCFEYCGAYKSNQKLYLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGVTRHLHEIDATF