; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019090 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019090
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:46294935..46309434
RNA-Seq ExpressionSpg019090
SyntenySpg019090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1447.69Show/hide
Query:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R   F G        QVESEA    VGKLI++P++F+K  PRGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI
        P PDTLPTS  S  S+SSTW+ELY E V++
Subjt:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.6e-0955.41Show/hide
Query:  ESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPVYI
        ES       G  + F S  +   PRGNR +L T KL KTVEIELP PDTLPTS  SS+S+SSTW+ELY E V++
Subjt:  ESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPVYI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.2e-1450Show/hide
Query:  QVESEALFDMVGKLIKFPSSFIK--------------------------NSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPV
        QV+SEA+F MV KLI++P++F+K                            PRGNR SLQ  KL KTVEIELP PDTLPTS+ SS+S+SSTW+ELY E V
Subjt:  QVESEALFDMVGKLIKFPSSFIK--------------------------NSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPV

Query:  YI
        ++
Subjt:  YI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]9.6e-1855.75Show/hide
Query:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSS
        NR  N    R+N+E+L  +L  R   F G        QVESEALF MV KLI++P++F+   PRGNR S QT KL KTVEIELP PDTLPTS  SS S+S
Subjt:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSS

Query:  STWVELYIEPVYI
        STW+ELY E V++
Subjt:  STWVELYIEPVYI

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1447.69Show/hide
Query:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R   F G        QVESEA    VGKLI++P++F+K  PRGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI
        P PDTLPTS  S  S+SSTW+ELY E V++
Subjt:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase1.4e-1447.69Show/hide
Query:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R   F G        QVESEA    VGKLI++P++F+K  PRGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI
        P PDTLPTS  S  S+SSTW+ELY E V++
Subjt:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI

A0A5A7UAH6 CCHC-type domain-containing protein8.0e-1055.41Show/hide
Query:  ESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPVYI
        ES       G  + F S  +   PRGNR +L T KL KTVEIELP PDTLPTS  SS+S+SSTW+ELY E V++
Subjt:  ESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPVYI

A0A5A7V2F2 Uncharacterized protein1.1e-1450Show/hide
Query:  QVESEALFDMVGKLIKFPSSFIK--------------------------NSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPV
        QV+SEA+F MV KLI++P++F+K                            PRGNR SLQ  KL KTVEIELP PDTLPTS+ SS+S+SSTW+ELY E V
Subjt:  QVESEALFDMVGKLIKFPSSFIK--------------------------NSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPV

Query:  YI
        ++
Subjt:  YI

A0A5D3BET3 Uncharacterized protein4.7e-1855.75Show/hide
Query:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSS
        NR  N    R+N+E+L  +L  R   F G        QVESEALF MV KLI++P++F+   PRGNR S QT KL KTVEIELP PDTLPTS  SS S+S
Subjt:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSS

Query:  STWVELYIEPVYI
        STW+ELY E V++
Subjt:  STWVELYIEPVYI

A0A5D3BV68 Reverse transcriptase1.4e-1447.69Show/hide
Query:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL
        NR  N    R+N+E+L  +L  R   F G        QVESEA    VGKLI++P++F+K  PRGNR SLQTR+L KT                 VEIEL
Subjt:  NRAQNF---RANQEDLWLSLVFRA--FWG-------VQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKT-----------------VEIEL

Query:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI
        P PDTLPTS  S  S+SSTW+ELY E V++
Subjt:  PRPDTLPTSTGSSRSSSSTWVELYIEPVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGCTTTCTCTAGTTTTTCGAGCATTCTGGGGTGTACAGGTCGAATCAGAAGCTCTATTTGATAT
GGTTGGGAAGCTTATTAAATTTCCTTCATCTTTCATTAAGAATTCACCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCC
CGAGGCCTGATACACTTCCAACGTCTACTGGAAGTTCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGCCTGTCTATATTATAAATGTTTTGTCCATTAGG
TCCCACTGGTGCCCATTGCGTTCGGTGGTTAAATTGCCTATCTTAGGTGGAGTTGTGAGCTTGGACAGCAAAATTTATTGCTGTTTAGGTGATAGGAAAATTTTGGGTTT
GCCTTATGTACGCCGTTATGCTGTCGAATTTTCAGTAGCACTACAGTGGAAGGATCGTGCATTCCATCAGGACGGTGTCGAGCTAGGCACAAGATTGTGCGCCACATGGC
ATTCGGGAATGCTTCATGGCCAGATTGCTCCACCGTACTTTGACCTCACAATTCATGGGTGTTGTGTAGGGATAAGTGAAGTTGTGCTAGAGGTGGTACTTGAGGATGTC
TGGTGCTTGGCGAGGGTTGTGACTTCGTTGGCTATGGGATTACAGCTGCAGACTTTTTGTCCATTGATTATTTTGTGTGCAATAGTCTCGTTGAAAACGACCTGCGACGG
TCTCAAAACTGCTTCTGTTTTTCTAGAAATGCAATCGCATTTGAAATTTGCCTTCCCAGAAATGCGGTCGCATTTCTGGGACCAGTGGTCTTCTTCGTTCTCCTCGCCAT
CACCAGTCGATGGCTGGGATAAGGCTGGGTACCTTATTCCAGGAAAACTATTCGACGTGGCCCACTTTGTCTATAGTGCAAACGGTGAACCTGAAATTGTTCATGTAGAG
ACATGCAAGTGGGGGCGTCCTATGCAGATGAGATTATCCTTTGATCTGCATGGAGAGCAAAGGCAAAAGAAGAAGGAACAACAGGAGTTGAGCGCACGAGAGTATCTTGA
AGAAGACACTTATATTCAAGAATTTCCAATGGATTTGCCCAGAGTCGATCCTTCTGTTGACCAACAAAATCGTGGAATGGAACAAAATGATTCAAACGGAGTCAGACACA
CTCAAAAGAGCATTCAGAGTCCAGAGGCATTCAGACTCAGAAGCATTCAAATCAAAAAGATCACCAAGTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGA
CGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAAAGAACATCAAGTCAACAGGTCGATCCAAGAGATCATCAAGCTAGCAGGCCGATCATCCAGAAAGATCAACAA
GCCAACAAGTCGATCCAAGATATCATCAAGCCAACAGGACAATCCAAGAGATCATCAAGCCAGCAAGTCGATCATCCAGAAAGATCAACAAGCCAACAAGCCGATCCAAG
AGATCATCAAGCCAACAGGCCGATCCGCTAGCAGGCCGTTCATCCAGGAAGATCGACAAGCCAACAAGTCGATCCTAGAGATCATCAATCTAGTAGGCTCGCCATCCAAG
AAGTTCAACAAACCGGTCCAAGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGCTTTCTCTAGTTTTTCGAGCATTCTGGGGTGTACAGGTCGAATCAGAAGCTCTATTTGATAT
GGTTGGGAAGCTTATTAAATTTCCTTCATCTTTCATTAAGAATTCACCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCC
CGAGGCCTGATACACTTCCAACGTCTACTGGAAGTTCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGCCTGTCTATATTATAAATGTTTTGTCCATTAGG
TCCCACTGGTGCCCATTGCGTTCGGTGGTTAAATTGCCTATCTTAGGTGGAGTTGTGAGCTTGGACAGCAAAATTTATTGCTGTTTAGGTGATAGGAAAATTTTGGGTTT
GCCTTATGTACGCCGTTATGCTGTCGAATTTTCAGTAGCACTACAGTGGAAGGATCGTGCATTCCATCAGGACGGTGTCGAGCTAGGCACAAGATTGTGCGCCACATGGC
ATTCGGGAATGCTTCATGGCCAGATTGCTCCACCGTACTTTGACCTCACAATTCATGGGTGTTGTGTAGGGATAAGTGAAGTTGTGCTAGAGGTGGTACTTGAGGATGTC
TGGTGCTTGGCGAGGGTTGTGACTTCGTTGGCTATGGGATTACAGCTGCAGACTTTTTGTCCATTGATTATTTTGTGTGCAATAGTCTCGTTGAAAACGACCTGCGACGG
TCTCAAAACTGCTTCTGTTTTTCTAGAAATGCAATCGCATTTGAAATTTGCCTTCCCAGAAATGCGGTCGCATTTCTGGGACCAGTGGTCTTCTTCGTTCTCCTCGCCAT
CACCAGTCGATGGCTGGGATAAGGCTGGGTACCTTATTCCAGGAAAACTATTCGACGTGGCCCACTTTGTCTATAGTGCAAACGGTGAACCTGAAATTGTTCATGTAGAG
ACATGCAAGTGGGGGCGTCCTATGCAGATGAGATTATCCTTTGATCTGCATGGAGAGCAAAGGCAAAAGAAGAAGGAACAACAGGAGTTGAGCGCACGAGAGTATCTTGA
AGAAGACACTTATATTCAAGAATTTCCAATGGATTTGCCCAGAGTCGATCCTTCTGTTGACCAACAAAATCGTGGAATGGAACAAAATGATTCAAACGGAGTCAGACACA
CTCAAAAGAGCATTCAGAGTCCAGAGGCATTCAGACTCAGAAGCATTCAAATCAAAAAGATCACCAAGTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGA
CGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAAAGAACATCAAGTCAACAGGTCGATCCAAGAGATCATCAAGCTAGCAGGCCGATCATCCAGAAAGATCAACAA
GCCAACAAGTCGATCCAAGATATCATCAAGCCAACAGGACAATCCAAGAGATCATCAAGCCAGCAAGTCGATCATCCAGAAAGATCAACAAGCCAACAAGCCGATCCAAG
AGATCATCAAGCCAACAGGCCGATCCGCTAGCAGGCCGTTCATCCAGGAAGATCGACAAGCCAACAAGTCGATCCTAGAGATCATCAATCTAGTAGGCTCGCCATCCAAG
AAGTTCAACAAACCGGTCCAAGAAGATTAA
Protein sequenceShow/hide protein sequence
MENRAQNFRANQEDLWLSLVFRAFWGVQVESEALFDMVGKLIKFPSSFIKNSPRGNRSSLQTRKLAKTVEIELPRPDTLPTSTGSSRSSSSTWVELYIEPVYIINVLSIR
SHWCPLRSVVKLPILGGVVSLDSKIYCCLGDRKILGLPYVRRYAVEFSVALQWKDRAFHQDGVELGTRLCATWHSGMLHGQIAPPYFDLTIHGCCVGISEVVLEVVLEDV
WCLARVVTSLAMGLQLQTFCPLIILCAIVSLKTTCDGLKTASVFLEMQSHLKFAFPEMRSHFWDQWSSSFSSPSPVDGWDKAGYLIPGKLFDVAHFVYSANGEPEIVHVE
TCKWGRPMQMRLSFDLHGEQRQKKKEQQELSAREYLEEDTYIQEFPMDLPRVDPSVDQQNRGMEQNDSNGVRHTQKSIQSPEAFRLRSIQIKKITKSAGRSSKRINKLTR
RSNRSSSQQADPKEHQVNRSIQEIIKLAGRSSRKINKPTSRSKISSSQQDNPRDHQASKSIIQKDQQANKPIQEIIKPTGRSASRPFIQEDRQANKSILEIINLVGSPSK
KFNKPVQED