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Spg019091 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019091
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:47310842..47313616
RNA-Seq ExpressionSpg019091
SyntenySpg019091
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-2462.6Show/hide
Query:  KPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE------------SVMSGLHHVYVERFNVSVGSTGI
        +PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E             VMSGLH V    FNVSVGST I
Subjt:  KPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE------------SVMSGLHHVYVERFNVSVGSTGI

Query:  VRGDDVCWLHAVFRAK-LGGPGG
        VRGD+VCWLHAVF AK  GGPGG
Subjt:  VRGDDVCWLHAVFRAK-LGGPGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.1e-2564.75Show/hide
Query:  GKPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIV
        G PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWLELY ES            VMS LH V    FNVSVGSTGIV
Subjt:  GKPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAK-LGGPGG
        RGDDVCWLHAVFRAK +GGPGG
Subjt:  RGDDVCWLHAVFRAK-LGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-2563.64Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    F+V VGSTGIVR
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAK-LGGPGG
        GDDVCWLHAVFRAK +GGPGG
Subjt:  GDDVCWLHAVFRAK-LGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.5e-2765.6Show/hide
Query:  KRYGKPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGST
        K Y  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    FNVSVGST
Subjt:  KRYGKPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAK-LGGPGG
        GIVRGDDVCWLHAVFRAK +GGPGG
Subjt:  GIVRGDDVCWLHAVFRAK-LGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.2e-2563.64Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    F+V VGSTGIVR
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAK-LGGPGG
        GDDVCWLHAVFRAK +GGPGG
Subjt:  GDDVCWLHAVFRAK-LGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.9e-2562.6Show/hide
Query:  KPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE------------SVMSGLHHVYVERFNVSVGSTGI
        +PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E             VMSGLH V    FNVSVGST I
Subjt:  KPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE------------SVMSGLHHVYVERFNVSVGSTGI

Query:  VRGDDVCWLHAVFRAK-LGGPGG
        VRGD+VCWLHAVF AK  GGPGG
Subjt:  VRGDDVCWLHAVFRAK-LGGPGG

A0A5A7UT17 CCHC-type domain-containing protein5.3e-2664.75Show/hide
Query:  GKPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIV
        G PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWLELY ES            VMS LH V    FNVSVGSTGIV
Subjt:  GKPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIV

Query:  RGDDVCWLHAVFRAK-LGGPGG
        RGDDVCWLHAVFRAK +GGPGG
Subjt:  RGDDVCWLHAVFRAK-LGGPGG

A0A5A7V9N3 Reverse transcriptase2.0e-2563.64Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    F+V VGSTGIVR
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAK-LGGPGG
        GDDVCWLHAVFRAK +GGPGG
Subjt:  GDDVCWLHAVFRAK-LGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein2.2e-2765.6Show/hide
Query:  KRYGKPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGST
        K Y  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    FNVSVGST
Subjt:  KRYGKPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGST

Query:  GIVRGDDVCWLHAVFRAK-LGGPGG
        GIVRGDDVCWLHAVFRAK +GGPGG
Subjt:  GIVRGDDVCWLHAVFRAK-LGGPGG

A0A5D3DSY7 Putative Retrotransposon protein2.0e-2563.64Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    F+V VGSTGIVR
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYVERFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAK-LGGPGG
        GDDVCWLHAVFRAK +GGPGG
Subjt:  GDDVCWLHAVFRAK-LGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCACTGCCTTGAAAGCAATTTTCGGCACGACCACGGTGCTAAATCGTATATTGCCGGTTGCTCCCCAAGGTTTACACAACACCCTCCTCGATCGTGCACTCGAGAG
AGAAGGATTGGAATTTAGGAAATACTTTGCTCAGAGAAAGGAAGGAGAGATGATGAAAAGATATGGGAAGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAG
ATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTATG
TCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCT
TGGTGGTCCGGGAGGGGACAAGAGGGTTGTTGCGTTTTTGTTCGTTGAAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGTTTTTTATGAGATGAAATTTGGAA
AAATCGCCGCTGAAATCGAGGCCAAAACCGAAGATCAAGCTTCTGTTTTTGCCCAGATTGAGCTCCAGACGCAACAGTGTCGGGACGCTACTCCAAAAGCGTCTGGACGC
TGTCCCGATACCGCAGGCGCACAGGTAAGGAAATCGCACAGCGTCGGGACGCTGCGTTGCAAGCGTCTCGACGCTGTCACGATGGCGGCTGAAATTAGGGCTTCAACAGG
CGCGGTTCAATGGGAGGGTGGTCCGGTTCAACCGATTCGGCTGGGCTGGGACCTATTTGGTTCTGTTCAGCTATATTTTTGGCATGGTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCACTGCCTTGAAAGCAATTTTCGGCACGACCACGGTGCTAAATCGTATATTGCCGGTTGCTCCCCAAGGTTTACACAACACCCTCCTCGATCGTGCACTCGAGAG
AGAAGGATTGGAATTTAGGAAATACTTTGCTCAGAGAAAGGAAGGAGAGATGATGAAAAGATATGGGAAGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAG
ATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTATG
TCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCT
TGGTGGTCCGGGAGGGGACAAGAGGGTTGTTGCGTTTTTGTTCGTTGAAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGTTTTTTATGAGATGAAATTTGGAA
AAATCGCCGCTGAAATCGAGGCCAAAACCGAAGATCAAGCTTCTGTTTTTGCCCAGATTGAGCTCCAGACGCAACAGTGTCGGGACGCTACTCCAAAAGCGTCTGGACGC
TGTCCCGATACCGCAGGCGCACAGGTAAGGAAATCGCACAGCGTCGGGACGCTGCGTTGCAAGCGTCTCGACGCTGTCACGATGGCGGCTGAAATTAGGGCTTCAACAGG
CGCGGTTCAATGGGAGGGTGGTCCGGTTCAACCGATTCGGCTGGGCTGGGACCTATTTGGTTCTGTTCAGCTATATTTTTGGCATGGTTCGTGA
Protein sequenceShow/hide protein sequence
MTTALKAIFGTTTVLNRILPVAPQGLHNTLLDRALEREGLEFRKYFAQRKEGEMMKRYGKPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVM
SGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLGGPGGDKRVVAFLFVEASLAKNGQVYNEVFYEMKFGKIAAEIEAKTEDQASVFAQIELQTQQCRDATPKASGR
CPDTAGAQVRKSHSVGTLRCKRLDAVTMAAEIRASTGAVQWEGGPVQPIRLGWDLFGSVQLYFWHGS