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Spg019104 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019104
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1:47299499..47301409
RNA-Seq ExpressionSpg019104
SyntenySpg019104
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.2e-0682.05Show/hide
Query:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTF
        SL TLSVL DNDA+VEIELPVPDTLPTSAE+S S SST+
Subjt:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTF
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0557.38Show/hide
Query:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSST----FNDSAGSTALWDQVILRDDE
        L TLSVL DNDA+VEIELPVPDTLPTSAE+S S SST    + +       W   I+R+D+
Subjt:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSST----FNDSAGSTALWDQVILRDDE
TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-0661.82Show/hide
Query:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILR
        SL TLSVLHDNDA+VEIEL VPDTLPTSAE+ RS S +     G    W   I R
Subjt:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILR
TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]5.6e-0860Show/hide
Query:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILRDDEDLG
        L TLSVLHDNDA+VEIELPVPDTLPTSAE+S+S S +     G    W  V+ R   D G
Subjt:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILRDDEDLG
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0557.38Show/hide
Query:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSST----FNDSAGSTALWDQVILRDDE
        L TLSVL DNDA+VEIELPVPDTLPTSAE+S S SST    + +       W   I+R+D+
Subjt:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSST----FNDSAGSTALWDQVILRDDE
TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.5e-0682.05Show/hide
Query:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTF
        SL TLSVL DNDA+VEIELPVPDTLPTSAE+S S SST+
Subjt:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTF
A0A5D3BAD1 Retrotrans_gag domain-containing protein5.6e-0658.18Show/hide
Query:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILR
        SL TLSVL DNDA+VEIELPVPDTLPTSAE+  S S +     G    W   + R
Subjt:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILR
A0A5D3BP54 Gag/pol protein1.9e-0661.82Show/hide
Query:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILR
        SL TLSVLHDNDA+VEIEL VPDTLPTSAE+ RS S +     G    W   I R
Subjt:  SLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILR
A0A5D3CIF4 Gag protease polyprotein2.7e-0860Show/hide
Query:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILRDDEDLG
        L TLSVLHDNDA+VEIELPVPDTLPTSAE+S+S S +     G    W  V+ R   D G
Subjt:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILRDDEDLG
A0A5D3DX39 Reverse transcriptase5.6e-0657.38Show/hide
Query:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSST----FNDSAGSTALWDQVILRDDE
        L TLSVL DNDA+VEIELPVPDTLPTSAE+S S SST    + +       W   I+R+D+
Subjt:  LLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSST----FNDSAGSTALWDQVILRDDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCACAAAATTTTCGTGCAAATCAGGAGGATCTCTGGTTTTCTCAGGTTTTTCGATCATTCTGGGGTGTACAGGTTGAATTAGAAGCTCAATTTGGTTATATTTCGTTGTT
GACGTTGAGTGTACTTCATGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAACTCCAGATCGACTTCCAGTACGTTCA
ATGATTCAGCAGGGTCAACAGCACTCTGGGATCAAGTGATCTTGCGAGATGATGAAGACTTGGGCGAGTTCTTCATTGATCTTGCTTGTGGGTTTCAGTTTCAAGATGAA
AGAATATGGAGAGTTGGAGTTTTGACTTGA
mRNA sequenceShow/hide mRNA sequence
GCACAAAATTTTCGTGCAAATCAGGAGGATCTCTGGTTTTCTCAGGTTTTTCGATCATTCTGGGGTGTACAGGTTGAATTAGAAGCTCAATTTGGTTATATTTCGTTGTT
GACGTTGAGTGTACTTCATGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAACTCCAGATCGACTTCCAGTACGTTCA
ATGATTCAGCAGGGTCAACAGCACTCTGGGATCAAGTGATCTTGCGAGATGATGAAGACTTGGGCGAGTTCTTCATTGATCTTGCTTGTGGGTTTCAGTTTCAAGATGAA
AGAATATGGAGAGTTGGAGTTTTGACTTGA
Protein sequenceShow/hide protein sequence
AQNFRANQEDLWFSQVFRSFWGVQVELEAQFGYISLLTLSVLHDNDAIVEIELPVPDTLPTSAENSRSTSSTFNDSAGSTALWDQVILRDDEDLGEFFIDLACGFQFQDE
RIWRVGVLT