; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019106 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019106
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:42075356..42078172
RNA-Seq ExpressionSpg019106
SyntenySpg019106
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-3262.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC +ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP
        + + K F E N D K+ S  PSRMKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-3367.44Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP
         K+ S  PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.1e-3265.89Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP
         K+ S  PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-3262.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP
        +L+ K F E N D K+ +  PSRMKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-3262.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP
        +L+ K F E N D K+ +  PSRMKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein1.6e-3265.89Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S FQR+SMA  EEENQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP
         K++S   SRMKRK SV INTEGSL   P
Subjt:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP

A0A5A7TQ06 Retrotransposon gag protein8.2e-3467.44Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP
         K+ S  PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP

A0A5A7UI09 Retrotransposon gag protein9.1e-3362.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP
        +L+ K F E N D K+ +  PSRMKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein5.3e-3365.89Show/hide
Query:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP
         K+ S  PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSNPSRMKRKFSVLINTEGSLKFLP

A0A5D3CCI8 Retrotransposon gag protein9.1e-3362.68Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST AR SAF+RLS+STS+K +PSTS FDRLK+T+DQ +R+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMD

Query:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP
        +L+ K F E N D K+ +  PSRMKRK SV INTEGSL   P
Subjt:  NLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGC
ATGTACTGATGGCAAGTTTCTTGTGAGGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGAAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAA
ACCCAAGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCC
AACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTG
TCTCCACATCGAGGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGAT
GAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCAAGTTC
GAAGGCTCTCATGCGCTCCGCTGTAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTG
CTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTT
CGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGC
ATGTACTGATGGCAAGTTTCTTGTGAGGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGAAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAA
ACCCAAGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCC
AACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTG
TCTCCACATCGAGGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGAT
GAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCAAGTTC
GAAGGCTCTCATGCGCTCCGCTGTAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCCGCTG
CTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTT
CGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTTAA
Protein sequenceShow/hide protein sequence
MNNFYTGSTTYCCFNEMRLQEDKAPIIASGEITLQGACTDGKFLVRYNPLFEPDSDIVTVMMTETRTTKERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQ
TQEKENFATSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSRKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFD
EVNSDKKLQSSNPSRMKRKFSVLINTEGSLKFLPPSSKALMRSAVVPSSKFEGSHALRCSSFLQVRKVLTRSAAAVHSSKFEGSHALRCSSFSPSSKVLMRFAAVPSPQV
RRFSRASLQFLP