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Spg019120 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019120
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold1:43574038..43580820
RNA-Seq ExpressionSpg019120
SyntenySpg019120
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.7e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWEH+ TRWN  LP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.9e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWEH+ TRWNS LP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-0779.41Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGESG  ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-1272.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
        +RDCPL CTGESG   DSI L FWGQDRVGSWEH+ TRWNS +P  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-0779.41Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGESG  ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.3e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWEH+ TRWN  LP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
A0A5A7U202 Reverse transcriptase3.3e-0779.41Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGESG  ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
A0A5A7U2P4 Integrase catalytic domain-containing protein9.3e-1071.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWEH+ TRWNS LP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
A0A5D3C3J6 Gag/pol protein2.6e-1272.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
        +RDCPL CTGESG   DSI L FWGQDRVGSWEH+ TRWNS +P  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIR
A0A5D3CBX3 Reverse transcriptase3.3e-0779.41Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGESG  ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWEH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTATGGGCTCCTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAG
CTGGGAACATAGTCTTACAAGATGGAATTCATTCCTTCCCGACATTAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCCATTGGGGCGTTGAGGAGTTCATGGT
GTTCTGAATCCTATGATCAGACCCTCCGAAGGGGTGGTTGCTCCAGGGCAACTCGCAGGCAGATCATAGGAATCTCACGTTGTGACCTAGGGCAACCCACGAAGCCACAC
GCTGGCAGCCTCTCTCCCCCTCTCAATCCTTCATCTCGCCGACAGCCTCCCACCCCTCTTTTCGTTGACTTAGCTGGCCAGACCGCAACGTTTCTTCTTTGGCGTCCCTC
ATCCGTGCGCGATCTTCATGTCCTCAAATCGAGAGTAGACTCGCGCCAATCTTCCTCTTCCACGAGCTGCAATGTCTGTTATGACTCCATCGGTTGCTTTAGACCACAAA
CCCATACGGCCAGAGGCGTCCTTTGCGTGATTTGGGTTCCAGCAGCTTCGAATTCGGTGTTCCGCCCTATGACCCATGGACATTCTCTTAAGTCGCAGTTGGACCCAATT
CAAACCTCGGACAATACGTATTCTAGGAGCTCTAGTGCTGTTTGTCAAATTTCAGCAAGTGTTGAGCCATTTTTTGGGAGCTCGTTAGGTTTGCTTAGGAGCGTTTTAGC
AATTAGATTCATGCATTATGGTGAGATTGTGAGTTTGATTGTGAAGTCATCGGGTGCTTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGGGTCGGC
GTGACTCGAAGGAGTCAGTCTCAGAGAGCTTTGTGAGGGCTATGAGTGTTGAGCGAGCTCGTGGAGCTTGGGAGAAAATTGAGTATGCATGGCATGGTGCGGAAATTCAT
GTGTGTGAGCCACTTACTCAGTACCGTGGTTTTGTACTGACCCACCACCAGGTTTTGCAGGTAGTCCTTGATATGAGACCTGACTCGCATTTATATTCTGTTGTGTTGAG
TTGGATTGTGTATGGATGTTGTGGAGTGAGATTGGTTGTCTGCTTAATATGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
GATTATGGGCTCCTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAG
CTGGGAACATAGTCTTACAAGATGGAATTCATTCCTTCCCGACATTAGGGTAAGTAGAGGTCCATTAGGTCCCACCGGTAGCTCCATTGGGGCGTTGAGGAGTTCATGGT
GTTCTGAATCCTATGATCAGACCCTCCGAAGGGGTGGTTGCTCCAGGGCAACTCGCAGGCAGATCATAGGAATCTCACGTTGTGACCTAGGGCAACCCACGAAGCCACAC
GCTGGCAGCCTCTCTCCCCCTCTCAATCCTTCATCTCGCCGACAGCCTCCCACCCCTCTTTTCGTTGACTTAGCTGGCCAGACCGCAACGTTTCTTCTTTGGCGTCCCTC
ATCCGTGCGCGATCTTCATGTCCTCAAATCGAGAGTAGACTCGCGCCAATCTTCCTCTTCCACGAGCTGCAATGTCTGTTATGACTCCATCGGTTGCTTTAGACCACAAA
CCCATACGGCCAGAGGCGTCCTTTGCGTGATTTGGGTTCCAGCAGCTTCGAATTCGGTGTTCCGCCCTATGACCCATGGACATTCTCTTAAGTCGCAGTTGGACCCAATT
CAAACCTCGGACAATACGTATTCTAGGAGCTCTAGTGCTGTTTGTCAAATTTCAGCAAGTGTTGAGCCATTTTTTGGGAGCTCGTTAGGTTTGCTTAGGAGCGTTTTAGC
AATTAGATTCATGCATTATGGTGAGATTGTGAGTTTGATTGTGAAGTCATCGGGTGCTTTGGGTAATATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGGGTCGGC
GTGACTCGAAGGAGTCAGTCTCAGAGAGCTTTGTGAGGGCTATGAGTGTTGAGCGAGCTCGTGGAGCTTGGGAGAAAATTGAGTATGCATGGCATGGTGCGGAAATTCAT
GTGTGTGAGCCACTTACTCAGTACCGTGGTTTTGTACTGACCCACCACCAGGTTTTGCAGGTAGTCCTTGATATGAGACCTGACTCGCATTTATATTCTGTTGTGTTGAG
TTGGATTGTGTATGGATGTTGTGGAGTGAGATTGGTTGTCTGCTTAATATGGTTTTAG
Protein sequenceShow/hide protein sequence
DYGLLSMRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLTRWNSFLPDIRVSRGPLGPTGSSIGALRSSWCSESYDQTLRRGGCSRATRRQIIGISRCDLGQPTKPH
AGSLSPPLNPSSRRQPPTPLFVDLAGQTATFLLWRPSSVRDLHVLKSRVDSRQSSSSTSCNVCYDSIGCFRPQTHTARGVLCVIWVPAASNSVFRPMTHGHSLKSQLDPI
QTSDNTYSRSSSAVCQISASVEPFFGSSLGLLRSVLAIRFMHYGEIVSLIVKSSGALGNMAKGRCTVRGLGGRRDSKESVSESFVRAMSVERARGAWEKIEYAWHGAEIH
VCEPLTQYRGFVLTHHQVLQVVLDMRPDSHLYSVVLSWIVYGCCGVRLVVCLIWF