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Spg019147 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019147
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:47771163..47774052
RNA-Seq ExpressionSpg019147
SyntenySpg019147
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1043.33Show/hide
Query:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG
        PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG

Query:  LLRRTVAVGGPGRKTQRRAQ
        ++        P R ++RR Q
Subjt:  LLRRTVAVGGPGRKTQRRAQ

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.0e-1041.18Show/hide
Query:  PRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGL
        PR NR +L T +L KTVEIE+PVPDTLPTSA SS+S+SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGL

Query:  LRRTVAVGGPGRKTQRRAQ
        +        P R ++RR Q
Subjt:  LRRTVAVGGPGRKTQRRAQ

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.0e-1150.5Show/hide
Query:  SNARFWLFDRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGG
        SN + +L  RPR NR SLQT +L KT                 VEIE+PVPDTLPTSA S  S+S ST        +  DDV WLHA+FR K AGGPGGG
Subjt:  SNARFWLFDRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGG

Query:  L
        +
Subjt:  L

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.3e-0940.98Show/hide
Query:  DRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDV
        + PR NRSSLQT EL KT                 VEIE+PVPDTLPTSA S  S+SS+  +                          EG    +  DDV
Subjt:  DRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDV

Query:  RWLHAIFRTKLAGGPGGGLLRR
         WLH +FR K+AGGPGGG+  R
Subjt:  RWLHAIFRTKLAGGPGGGLLRR

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1043.33Show/hide
Query:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG
        PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG

Query:  LLRRTVAVGGPGRKTQRRAQ
        ++        P R ++RR Q
Subjt:  LLRRTVAVGGPGRKTQRRAQ

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase5.6e-1143.33Show/hide
Query:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG
        PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG

Query:  LLRRTVAVGGPGRKTQRRAQ
        ++        P R ++RR Q
Subjt:  LLRRTVAVGGPGRKTQRRAQ

A0A5A7UAH6 CCHC-type domain-containing protein9.6e-1141.18Show/hide
Query:  PRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGL
        PR NR +L T +L KTVEIE+PVPDTLPTSA SS+S+SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGGL

Query:  LRRTVAVGGPGRKTQRRAQ
        +        P R ++RR Q
Subjt:  LRRTVAVGGPGRKTQRRAQ

A0A5A7VIY9 Uncharacterized protein6.2e-1040.98Show/hide
Query:  DRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDV
        + PR NRSSLQT EL KT                 VEIE+PVPDTLPTSA S  S+SS+  +                          EG    +  DDV
Subjt:  DRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ--------------------------EGQWVSLEDDDV

Query:  RWLHAIFRTKLAGGPGGGLLRR
         WLH +FR K+AGGPGGG+  R
Subjt:  RWLHAIFRTKLAGGPGGGLLRR

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.9e-1150.5Show/hide
Query:  SNARFWLFDRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGG
        SN + +L  RPR NR SLQT +L KT                 VEIE+PVPDTLPTSA S  S+S ST        +  DDV WLHA+FR K AGGPGGG
Subjt:  SNARFWLFDRPRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQEGQWVSLEDDDVRWLHAIFRTKLAGGPGGG

Query:  L
        +
Subjt:  L

A0A5D3D150 Reverse transcriptase5.6e-1143.33Show/hide
Query:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG
        PR NR SLQT EL KT                 VEIE+P+PDTLPTSA SS S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRENRSSLQTRELAKT-----------------VEIEIPVPDTLPTSAGSSRSSSSSTFQ----------EGQWVSLEDDDVRWLHAIFRTKLAGGPGGG

Query:  LLRRTVAVGGPGRKTQRRAQ
        ++        P R ++RR Q
Subjt:  LLRRTVAVGGPGRKTQRRAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTTTAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGCTGAATCAGAAGCTCTATTTGAATT
CATGAGCAGTGAAGATAAGACTATCTTTGGTTCTAATGCTCGGTTCTGGTTGTTTGACAGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGAGAACTAGCTAAGACAG
TAGAGATCGAGATCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGTTCAACATTTCAGGAGGGTCAATGGGTATCGTTAGAGGATGAC
GATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAG
AAGAGCGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTTTAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGCTGAATCAGAAGCTCTATTTGAATT
CATGAGCAGTGAAGATAAGACTATCTTTGGTTCTAATGCTCGGTTCTGGTTGTTTGACAGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGAGAACTAGCTAAGACAG
TAGAGATCGAGATCCCGGTGCCTGATACACTGCCAACGTCTGCTGGAAGTTCCAGATCAAGCTCCAGTTCAACATTTCAGGAGGGTCAATGGGTATCGTTAGAGGATGAC
GATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAG
AAGAGCGCAGTGA
Protein sequenceShow/hide protein sequence
MENRAQDFLAKQEDLWFSLVFRAFWGVQAESEALFEFMSSEDKTIFGSNARFWLFDRPRENRSSLQTRELAKTVEIEIPVPDTLPTSAGSSRSSSSSTFQEGQWVSLEDD
DVRWLHAIFRTKLAGGPGGGLLRRTVAVGGPGRKTQRRAQ