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Spg019165 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019165
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:47577196..47585633
RNA-Seq ExpressionSpg019165
SyntenySpg019165
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-1048.48Show/hide
Query:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        C I   EN  + +  S S++ N E   P++MS M+TD  T+E+RMA++EKK+++L+K VEE+D EIA L N +ES D AESS T  IK  +KGK I  E
Subjt:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

KAA0035918.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.6e-1147.06Show/hide
Query:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFEI
        C I   EN M+ +  S S+  + E   P++MS M+T+  T+E RM ++ KK++ML+K+VEE+D EIASL N +ES D AESS T  +K  DKGK +  EI
Subjt:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFEI

Query:  FL
         L
Subjt:  FL

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-1050.52Show/hide
Query:  IATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        I   EN  + +  S S++ N E   P++MS M+TD  T+E+RMA++EKK++ML+K VEEKD EIA L N +ES D AESS T  IK  +KGK I  E
Subjt:  IATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-1053.01Show/hide
Query:  SPSQQPNETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        S    P ET  P++MS M+T+  T+E+RM K+EKKI+ML+K+VEE+D EIASL N +ES D  ESS T   K  DKGK +  E
Subjt:  SPSQQPNETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.1e-1049.48Show/hide
Query:  IATAENLMLGKVISPSQQPNETS-SPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        I   EN  + +  S S++ NE +  P++MS M+TD  T+E+RMA++EKK++ML+K VEE+D EIASL N +ES D  ESS T  IK  +KGK I  E
Subjt:  IATAENLMLGKVISPSQQPNETS-SPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

TrEMBL top hitse value%identityAlignment
A0A5A7SI89 Ty3-gypsy retrotransposon protein3.0e-1048.48Show/hide
Query:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        C I   EN  + +  S S++ N E   P++MS M+TD  T+E+RMA++EKK+++L+K VEE+D EIA L N +ES D AESS T  IK  +KGK I  E
Subjt:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

A0A5A7SZB7 Ty3-gypsy retrotransposon protein4.7e-1147.06Show/hide
Query:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFEI
        C I   EN M+ +  S S+  + E   P++MS M+T+  T+E RM ++ KK++ML+K+VEE+D EIASL N +ES D AESS T  +K  DKGK +  EI
Subjt:  CEIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFEI

Query:  FL
         L
Subjt:  FL

A0A5A7TZV9 Ty3-gypsy retrotransposon protein3.9e-1051.61Show/hide
Query:  EIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGK
        EI   ENL++ +  S  +  N E   P +MS M+TD  T+E+RMAK+EKKI+ML+K +EE+D EIASL N  ES D AESS    +K  DKGK
Subjt:  EIATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGK

A0A5A7U5H1 Ty3-gypsy retrotransposon protein2.3e-1050.52Show/hide
Query:  IATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        I   EN  + +  S S++ N E   P++MS M+TD  T+E+RMA++EKK++ML+K VEEKD EIA L N +ES D AESS T  IK  +KGK I  E
Subjt:  IATAENLMLGKVISPSQQPN-ETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

A0A5A7U601 Ty3-gypsy retrotransposon protein1.8e-1053.01Show/hide
Query:  SPSQQPNETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE
        S    P ET  P++MS M+T+  T+E+RM K+EKKI+ML+K+VEE+D EIASL N +ES D  ESS T   K  DKGK +  E
Subjt:  SPSQQPNETSSPDVMSAMMTDAGTTEERMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIK--DKGKIIAFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACAAGAAGGAAATCCAACAAATTTCTCCATTTAAGCAAGGTGATGGCATAAATCAATATCGAGGTGCAAAGAAGTCTCGTTCAAAACGACCTGTGGACGACTC
AGAACTACCTCTGTTTTTCCAGAAATGCGGCCATATTTCATTTTGCCTTCCTAGAAATGCGGTCGCATTTCTGGAGTCAGAGAAGGTAGAGCCCAGAGCATTCTCCCAAA
GTCCAGAGTCTTCAGAAGTCAGAGAGTCCAGAGAATTCAGAAGATCCAAGATTCAGAATTCAGCCATCTCAAGACTCAGAAGATCCAACGACTGCACGACTCCAAAGAAT
AAACCGTTTCTTCATCAAGATACAGCTACGAGCAAAGTTCACAAGCTCGGAATGATACTCACTTCCATAAGTAAATCTTTCATGCAGTGGCAAACCATGGGTGTCATGAA
TGCCCCTGGTTACTCATCGCTCCAAGGAAACCCAACACGAAGACAGTCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCGAAATCGCCACTG
CAGAAAATCTGATGCTTGGCAAAGTCATCTCTCCTTCTCAGCAACCAAACGAAACATCCAGTCCTGATGTGATGTCTGCTATGATGACTGATGCTGGAACTACTGAAGAA
CGAATGGCTAAAGTTGAGAAGAAAATCAGCATGTTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCTTCTCTCGGGAACCAGATGGAAAGTTGGGATGTTGCTGA
ATCGAGTAAGACCCCTGCCATCAAAGACAAGGGAAAGATCATTGCATTTGAAATTTTTCTG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAACAAGAAGGAAATCCAACAAATTTCTCCATTTAAGCAAGGTGATGGCATAAATCAATATCGAGGTGCAAAGAAGTCTCGTTCAAAACGACCTGTGGACGACTC
AGAACTACCTCTGTTTTTCCAGAAATGCGGCCATATTTCATTTTGCCTTCCTAGAAATGCGGTCGCATTTCTGGAGTCAGAGAAGGTAGAGCCCAGAGCATTCTCCCAAA
GTCCAGAGTCTTCAGAAGTCAGAGAGTCCAGAGAATTCAGAAGATCCAAGATTCAGAATTCAGCCATCTCAAGACTCAGAAGATCCAACGACTGCACGACTCCAAAGAAT
AAACCGTTTCTTCATCAAGATACAGCTACGAGCAAAGTTCACAAGCTCGGAATGATACTCACTTCCATAAGTAAATCTTTCATGCAGTGGCAAACCATGGGTGTCATGAA
TGCCCCTGGTTACTCATCGCTCCAAGGAAACCCAACACGAAGACAGTCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCGAAATCGCCACTG
CAGAAAATCTGATGCTTGGCAAAGTCATCTCTCCTTCTCAGCAACCAAACGAAACATCCAGTCCTGATGTGATGTCTGCTATGATGACTGATGCTGGAACTACTGAAGAA
CGAATGGCTAAAGTTGAGAAGAAAATCAGCATGTTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCTTCTCTCGGGAACCAGATGGAAAGTTGGGATGTTGCTGA
ATCGAGTAAGACCCCTGCCATCAAAGACAAGGGAAAGATCATTGCATTTGAAATTTTTCTG
Protein sequenceShow/hide protein sequence
MKNKKEIQQISPFKQGDGINQYRGAKKSRSKRPVDDSELPLFFQKCGHISFCLPRNAVAFLESEKVEPRAFSQSPESSEVRESREFRRSKIQNSAISRLRRSNDCTTPKN
KPFLHQDTATSKVHKLGMILTSISKSFMQWQTMGVMNAPGYSSLQGNPTRRQSNSCHCKQDAETHDRICEIATAENLMLGKVISPSQQPNETSSPDVMSAMMTDAGTTEE
RMAKVEKKISMLLKMVEEKDQEIASLGNQMESWDVAESSKTPAIKDKGKIIAFEIFL