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Spg019221 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019221
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:50177124..50179485
RNA-Seq ExpressionSpg019221
SyntenySpg019221
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-0854.32Show/hide
Query:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSS----------------YFLNRVMSGLHLMWLGRG
        L TLSVLRDNDAV           VEIELPVPDTLPTS ES  S+SS                YF N+VMSGLHLM++G+G
Subjt:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSS----------------YFLNRVMSGLHLMWLGRG

KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]3.7e-1066.15Show/hide
Query:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG
        L TLSVLRDNDAV           VEIEL VPDTLPTSAESS S+SSYF N+V+SGLHL+ +G+G
Subjt:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.3e-1069.35Show/hide
Query:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMW
        SL TLSVLRDNDAV           VEIELPVPDTLPTS ESS S+SSYF N+VMSGLHL++
Subjt:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMW

TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-1066.15Show/hide
Query:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG
        L TLSVLRDNDAV           VEIEL VPDTLPTSAESS S+SSYF N+V+SGLHL+ +G+G
Subjt:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]1.1e-1166.67Show/hide
Query:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG
        SL TLSVLRDNDAV           VEIELPVPD LPTSAESS+S+SSYF N+VMSGL+L+++G+G
Subjt:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG

TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein1.8e-1066.15Show/hide
Query:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG
        L TLSVLRDNDAV           VEIEL VPDTLPTSAESS S+SSYF N+V+SGLHL+ +G+G
Subjt:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein6.1e-1169.35Show/hide
Query:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMW
        SL TLSVLRDNDAV           VEIELPVPDTLPTS ESS S+SSYF N+VMSGLHL++
Subjt:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMW

A0A5D3BV68 Reverse transcriptase5.8e-0954.32Show/hide
Query:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSS----------------YFLNRVMSGLHLMWLGRG
        L TLSVLRDNDAV           VEIELPVPDTLPTS ES  S+SS                YF N+VMSGLHLM++G+G
Subjt:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSS----------------YFLNRVMSGLHLMWLGRG

A0A5D3CPH9 Ty3-gypsy retrotransposon protein1.8e-1066.15Show/hide
Query:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG
        L TLSVLRDNDAV           VEIEL VPDTLPTSAESS S+SSYF N+V+SGLHL+ +G+G
Subjt:  LLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG

A0A5D3DE96 Uncharacterized protein5.6e-1266.67Show/hide
Query:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG
        SL TLSVLRDNDAV           VEIELPVPD LPTSAESS+S+SSYF N+VMSGL+L+++G+G
Subjt:  SLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVMSGLHLMWLGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGAACTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAAGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGC
GGTCCCCACTACATCGTAGAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTATTTTCTAAACCGAGTTATG
TCAGGGCTGCACCTCATGTGGCTTGGGAGGGGGTGTGACATAGACGACGGTGCCATAATGACATACCCTGAAGGCGAGAAACAAAAGCCACAGGCTGAGGAGTTGAGGAG
GCAACACTCAAAGACAAAGGAACAACGATCAACTTGTAAAGACCACCATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGAACTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAAGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGC
GGTCCCCACTACATCGTAGAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTATTTTCTAAACCGAGTTATG
TCAGGGCTGCACCTCATGTGGCTTGGGAGGGGGTGTGACATAGACGACGGTGCCATAATGACATACCCTGAAGGCGAGAAACAAAAGCCACAGGCTGAGGAGTTGAGGAG
GCAACACTCAAAGACAAAGGAACAACGATCAACTTGTAAAGACCACCATCAATAA
Protein sequenceShow/hide protein sequence
MVFEMENRAQDFRANQEELWFSLVFRAFWGVQVESEALFDIEPEAIWYRVHTSYISLLTLSVLRDNDAVVSAGRSPLHRRVEIELPVPDTLPTSAESSSSSSSYFLNRVM
SGLHLMWLGRGCDIDDGAIMTYPEGEKQKPQAEELRRQHSKTKEQRSTCKDHHQ