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Spg019225 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019225
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease
Genome locationscaffold1:46786133..46790988
RNA-Seq ExpressionSpg019225
SyntenySpg019225
Gene Ontology termsGO:0006298 - mismatch repair (biological process)
GO:0043137 - DNA replication, removal of RNA primer (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0032299 - ribonuclease H2 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3007922.1 ribonuclease H2 subunit A [Olea europaea subsp. europaea]5.0e-1148.94Show/hide
Query:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLG---MMVESMIETLKSQVKSKVCIS
        S LNFA SKTL+EEK EELF+NL+A+ESIGW VDVIDPRELSSKML  +   L           ++  L    ++ E  ++T+    K KV +S
Subjt:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLG---MMVESMIETLKSQVKSKVCIS
KCW65195.1 hypothetical protein EUGRSUZ_G02689 [Eucalyptus grandis]1.3e-1150Show/hide
Query:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        S LNFA SKTL+EEK EELF+NL+ANESIGW VDVIDPRELSSKML  +   L +         +   L M   + E  ++T+    K +V +S
Subjt:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
XP_008453982.1 PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo]3.8e-1146.46Show/hide
Query:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        ++ + S LNFA SKTL+EEK EELF++L+ANESIGW VDVIDPRELSSKML+     L     G     +   L M   + E  ++T+    K ++ +S
Subjt:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
XP_010067129.1 ribonuclease H2 subunit A [Eucalyptus grandis]1.3e-1150Show/hide
Query:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        S LNFA SKTL+EEK EELF+NL+ANESIGW VDVIDPRELSSKML  +   L +         +   L M   + E  ++T+    K +V +S
Subjt:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
XP_022145114.1 ribonuclease H2 subunit A [Momordica charantia]5.0e-1148.94Show/hide
Query:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        S L+FA SKTL+EEK EELF+NL+ANESIGW VDVIDPRELSSKML+     L           +   LGM   + E  ++T+    K ++ +S
Subjt:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
TrEMBL top hitse value%identityAlignment
A0A059BHP0 Ribonuclease6.4e-1250Show/hide
Query:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        S LNFA SKTL+EEK EELF+NL+ANESIGW VDVIDPRELSSKML  +   L +         +   L M   + E  ++T+    K +V +S
Subjt:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
A0A1S3BXP1 Ribonuclease1.9e-1146.46Show/hide
Query:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        ++ + S LNFA SKTL+EEK EELF++L+ANESIGW VDVIDPRELSSKML+     L     G     +   L M   + E  ++T+    K ++ +S
Subjt:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
A0A5A7TT92 Ribonuclease1.9e-1146.46Show/hide
Query:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        ++ + S LNFA SKTL+EEK EELF++L+ANESIGW VDVIDPRELSSKML+     L     G     +   L M   + E  ++T+    K ++ +S
Subjt:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
A0A6J1CU93 Ribonuclease2.4e-1148.94Show/hide
Query:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        S L+FA SKTL+EEK EELF+NL+ANESIGW VDVIDPRELSSKML+     L           +   LGM   + E  ++T+    K ++ +S
Subjt:  SCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
A0A6J1IPY0 Ribonuclease3.2e-1146.46Show/hide
Query:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
        ++ + S LNFA SKTL+EEK EELF+ L+ANESIGW VDVIDPRELSSKML+     L           +   LGM   + E  ++T+    K ++ +S
Subjt:  FILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCIS
SwissProt top hitse value%identityAlignment
Q9SEZ6 Ribonuclease H2 subunit A1.8e-1139.25Show/hide
Query:  LNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCISRYLCPTYE
        L+FA SKTL+EEK EEL+++L+ ++S+GW VDVIDPRELS+KML+ +   L           +K  L M   + E+ ++T+    K ++ +S    P+ +
Subjt:  LNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCISRYLCPTYE

Query:  FDESLNA
        F  S  A
Subjt:  FDESLNA
Arabidopsis top hitse value%identityAlignment
AT2G25100.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-1239.25Show/hide
Query:  LNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCISRYLCPTYE
        L+FA SKTL+EEK EEL+++L+ ++S+GW VDVIDPRELS+KML+ +   L           +K  L M   + E+ ++T+    K ++ +S    P+ +
Subjt:  LNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGM---MVESMIETLKSQVKSKVCISRYLCPTYE

Query:  FDESLNA
        F  S  A
Subjt:  FDESLNA
AT2G25100.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-1166.67Show/hide
Query:  LNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLS
        L+FA SKTL+EEK EEL+++L+ ++S+GW VDVIDPRELS+KML+
Subjt:  LNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCGTGCAGACGAGGGTTGACGTCAGCATGGAGGATGCTGACGTCATGAGACGCGGTCTAGGCTTCACGTTCGCGGTCCAGTTTCCCGTTAGACCGGTTCGGCGGTC
CGGTTGTTTACTCCGCCCGTTTCTCCCTCGAGCTCTTCTCTTCTCCGAAAGATTCTCTCACTCTCATCGCCATCTTTCATCATCGTGGCTTGCCGCCGTTCCCGTCGTCG
TGGGTTTGCTCCAGCTTACCGCCGTTTTGTTATCGTGGAAGAGTCGTGGGTTTTTCTCCGTCGTTGGTGCTGTTCGTGGGTGTTGTTCTCCTTCCCATTTCCATTTCCTC
TTTCGTTCTGATATAGTTTCTCCACCCTTAAGCATGGGCCAATGGTGTATGAATGCCTGTACTATGCTAGTTTTTATTTTGAAGAACTCTTGTCTAAATTTTGCAGCCTC
AAAAACGTTGAGAGAAGAGAAGATGGAGGAATTGTTTAAGAATTTGAGGGCTAATGAATCTATTGGATGGGTTGTTGATGTAATAGATCCACGGGAGCTTTCATCCAAAA
TGCTAAGCAATTCTGATCCTTTACTTGGGTTACGTTGTTTTGGAAAGACTTTTTGGAGCTTGAAAAATTCATTGGGCATGATGGTTGAGTCCATGATTGAGACTTTGAAA
TCACAGGTGAAAAGCAAGGTGTGTATATCAAGGTATCTTTGTCCGACTTATGAATTTGATGAATCTTTGAATGCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCGTGCAGACGAGGGTTGACGTCAGCATGGAGGATGCTGACGTCATGAGACGCGGTCTAGGCTTCACGTTCGCGGTCCAGTTTCCCGTTAGACCGGTTCGGCGGTC
CGGTTGTTTACTCCGCCCGTTTCTCCCTCGAGCTCTTCTCTTCTCCGAAAGATTCTCTCACTCTCATCGCCATCTTTCATCATCGTGGCTTGCCGCCGTTCCCGTCGTCG
TGGGTTTGCTCCAGCTTACCGCCGTTTTGTTATCGTGGAAGAGTCGTGGGTTTTTCTCCGTCGTTGGTGCTGTTCGTGGGTGTTGTTCTCCTTCCCATTTCCATTTCCTC
TTTCGTTCTGATATAGTTTCTCCACCCTTAAGCATGGGCCAATGGTGTATGAATGCCTGTACTATGCTAGTTTTTATTTTGAAGAACTCTTGTCTAAATTTTGCAGCCTC
AAAAACGTTGAGAGAAGAGAAGATGGAGGAATTGTTTAAGAATTTGAGGGCTAATGAATCTATTGGATGGGTTGTTGATGTAATAGATCCACGGGAGCTTTCATCCAAAA
TGCTAAGCAATTCTGATCCTTTACTTGGGTTACGTTGTTTTGGAAAGACTTTTTGGAGCTTGAAAAATTCATTGGGCATGATGGTTGAGTCCATGATTGAGACTTTGAAA
TCACAGGTGAAAAGCAAGGTGTGTATATCAAGGTATCTTTGTCCGACTTATGAATTTGATGAATCTTTGAATGCTAAATAA
Protein sequenceShow/hide protein sequence
MRVQTRVDVSMEDADVMRRGLGFTFAVQFPVRPVRRSGCLLRPFLPRALLFSERFSHSHRHLSSSWLAAVPVVVGLLQLTAVLLSWKSRGFFSVVGAVRGCCSPSHFHFL
FRSDIVSPPLSMGQWCMNACTMLVFILKNSCLNFAASKTLREEKMEELFKNLRANESIGWVVDVIDPRELSSKMLSNSDPLLGLRCFGKTFWSLKNSLGMMVESMIETLK
SQVKSKVCISRYLCPTYEFDESLNAK