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Spg019227 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019227
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:45265797..45271895
RNA-Seq ExpressionSpg019227
SyntenySpg019227
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-2353.28Show/hide
Query:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE
        E  K+   PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPV D LPTSAESSR++SSTW+ELY ESVH+      + +
Subjt:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE

Query:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG
         +R           +  DDV WLHAIFR+K AGG GG
Subjt:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-1843.62Show/hide
Query:  VYKLNQKPYLGIESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHI-
        V+K NQK YL IESGKSG   ++    LR N + + +G       T+  +        R +  +VEIELPV DTLPTSAESS ++SSTW+ELY ESVH+ 
Subjt:  VYKLNQKPYLGIESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHI-

Query:  ------------VNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG
                    ++ +F+V  G    +  DDV WLHA+FR+K  GG GG
Subjt:  ------------VNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.4e-2349.11Show/hide
Query:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI
        V K NQK YL         +++G   K+    L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEI
Subjt:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI

Query:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG
        EL V DTLPTSAESS ++S         S  IV                DDV WLH +FR+K  GG GG
Subjt:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.4e-2349.11Show/hide
Query:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI
        V K NQK YL         +++G   K+    L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEI
Subjt:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI

Query:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG
        EL V DTLPTSAESS ++S         S  IV                DDV WLH +FR+K  GG GG
Subjt:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-2353.28Show/hide
Query:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE
        E  K+   PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPV D LPTSAESSR++SSTW+ELY ESVH+      + +
Subjt:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE

Query:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG
         +R           +  DDV WLHAIFR+K AGG GG
Subjt:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.6e-2353.28Show/hide
Query:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE
        E  K+   PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPV D LPTSAESSR++SSTW+ELY ESVH+      + +
Subjt:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE

Query:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG
         +R           +  DDV WLHAIFR+K AGG GG
Subjt:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG

A0A5A7V9N3 Reverse transcriptase1.9e-1843.62Show/hide
Query:  VYKLNQKPYLGIESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHI-
        V+K NQK YL IESGKSG   ++    LR N + + +G       T+  +        R +  +VEIELPV DTLPTSAESS ++SSTW+ELY ESVH+ 
Subjt:  VYKLNQKPYLGIESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHI-

Query:  ------------VNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG
                    ++ +F+V  G    +  DDV WLHA+FR+K  GG GG
Subjt:  ------------VNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG

A0A5A7VGQ5 Uncharacterized protein1.2e-2349.11Show/hide
Query:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI
        V K NQK YL         +++G   K+    L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEI
Subjt:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI

Query:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG
        EL V DTLPTSAESS ++S         S  IV                DDV WLH +FR+K  GG GG
Subjt:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG

A0A5D3BG85 Uncharacterized protein1.2e-2349.11Show/hide
Query:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI
        V K NQK YL         +++G   K+    L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEI
Subjt:  VYKLNQKPYL--------GIESG---KSGYIPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEI

Query:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG
        EL V DTLPTSAESS ++S         S  IV                DDV WLH +FR+K  GG GG
Subjt:  ELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGG

A0A5D3BTP3 Reverse transcriptase2.6e-2353.28Show/hide
Query:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE
        E  K+   PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPV D LPTSAESSR++SSTW+ELY ESVH+      + +
Subjt:  ESGKSGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQE

Query:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG
         +R           +  DDV WLHAIFR+K AGG GG
Subjt:  GQRVS---------LEEDDVRWLHAIFRSKLAGGSGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTCGCATTTCTAGAGCACTTGATGGAGAGAGTGAGGGAAGAAGAAGATTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGA
ATCTGGGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTGTTTTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGA
AGCCCTATTTGGGTATAGAATCTGGAAAATCTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACAT
CGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGGCTGATACACTGCCAACGTCTGCTGA
AAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTTCATATTGTAAATGATTTGTTTAATGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGG
ACGATGTCCGTTGGCTTCATGCCATCTTTCGGTCTAAGCTAGCAGGTGGTTCGGGAGGGGACAGTTTGTGGCCCGGTTCACCATATTTTAGACCAGTTCAAGCAAGTTTT
GAGTTGGTTCAGCATGGTTTAGCATATATTTTTGCCGGTTCGAAGAGTTTGGACACGGTTCGAGGCTGTTTCAGGCTGATCCATGCTCGGTTTTGTGTCGCCTTGGGCGC
GACCTCCCTTCGAAAAGTGTTTGCATGGGTCAATACCAAGGTGAATGGGGAAAATGTCCATAAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGTGCTGCAGCAAA
GCAAGGAGCAAAACTGCCACGTCACAGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTCGCATTTCTAGAGCACTTGATGGAGAGAGTGAGGGAAGAAGAAGATTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGA
ATCTGGGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTGTTTTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGA
AGCCCTATTTGGGTATAGAATCTGGAAAATCTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACAT
CGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGGCTGATACACTGCCAACGTCTGCTGA
AAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTTCATATTGTAAATGATTTGTTTAATGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGG
ACGATGTCCGTTGGCTTCATGCCATCTTTCGGTCTAAGCTAGCAGGTGGTTCGGGAGGGGACAGTTTGTGGCCCGGTTCACCATATTTTAGACCAGTTCAAGCAAGTTTT
GAGTTGGTTCAGCATGGTTTAGCATATATTTTTGCCGGTTCGAAGAGTTTGGACACGGTTCGAGGCTGTTTCAGGCTGATCCATGCTCGGTTTTGTGTCGCCTTGGGCGC
GACCTCCCTTCGAAAAGTGTTTGCATGGGTCAATACCAAGGTGAATGGGGAAAATGTCCATAAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGTGCTGCAGCAAA
GCAAGGAGCAAAACTGCCACGTCACAGCTCGTTAG
Protein sequenceShow/hide protein sequence
MRRISRALDGESEGRRRFVVLRLKKIGKAHAKPAIAESGINLSTSEHRIFEQSRRISGVFWFFEHSGVYKLNQKPYLGIESGKSGYIPLLTLSVLRDNDAVVSAGRAPLH
RRTSKRWLYWACPTQRRSVMLVEIELPVADTLPTSAESSRTSSSTWVELYIESVHIVNDLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGSGGDSLWPGSPYFRPVQASF
ELVQHGLAYIFAGSKSLDTVRGCFRLIHARFCVALGATSLRKVFAWVNTKVNGENVHKYIAERLEGAKSVLQQSKEQNCHVTAR