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Spg019235 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019235
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:41927184..41929447
RNA-Seq ExpressionSpg019235
SyntenySpg019235
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]9.8e-1059.15Show/hide
Query:  KPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV
        +PRGNR SLQT KL KTVEIELP+PDTLPT AES  S++S                YF N+VMSG HLVYV
Subjt:  KPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]1.8e-0855.71Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV
        PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS+S++S                YF  +VMS  HL+YV
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-0856.34Show/hide
Query:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVY
        KPRGN+ SLQT +L KT                 VEIEL VPDTLPTSAES  S++SYF N+VMSG HLV+
Subjt:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVY

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.1e-0858.57Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV
        PRGNR S QT KL KTVEIELPVPDTLPTSAESS S++S                Y  N+VMSG H +YV
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]3.5e-0745.65Show/hide
Query:  PRGNRSSLQTRKLAKT--------------------------------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVYV
        PRGNRSSLQT +L  T                                      VEIELPVPD LPTSAESS S++SYF N+VMSG +LVYV
Subjt:  PRGNRSSLQTRKLAKT--------------------------------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVYV

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein4.7e-1059.15Show/hide
Query:  KPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV
        +PRGNR SLQT KL KTVEIELP+PDTLPT AES  S++S                YF N+VMSG HLVYV
Subjt:  KPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV

A0A5A7V2F2 Uncharacterized protein8.9e-0955.71Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV
        PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS+S++S                YF  +VMS  HL+YV
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.2e-0856.34Show/hide
Query:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVY
        KPRGN+ SLQT +L KT                 VEIEL VPDTLPTSAES  S++SYF N+VMSG HLV+
Subjt:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVY

A0A5D3BET3 Uncharacterized protein5.2e-0958.57Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV
        PRGNR S QT KL KTVEIELPVPDTLPTSAESS S++S                Y  N+VMSG H +YV
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTS----------------YFQNRVMSGRHLVYV

A0A5D3DE96 Uncharacterized protein1.7e-0745.65Show/hide
Query:  PRGNRSSLQTRKLAKT--------------------------------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVYV
        PRGNRSSLQT +L  T                                      VEIELPVPD LPTSAESS S++SYF N+VMSG +LVYV
Subjt:  PRGNRSSLQTRKLAKT--------------------------------------VEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTCGGCTCTAATCCTAAAAGATGAACACTTGGTGACTCCACCAGATTTATCAGTAAGGGTTATCTGGTGTAAACCCAAGACTTCCCTAGGATTATTTTCTCTTGT
CATCTATTGGTGGTTTCATTGTTGGACTAAGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACAC
TGCCAACGTCTGCTGAAAGTTCCAGATCAAGCACCAGTTATTTTCAAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTTACAGGTTTTTCAGGGATTCCGCTGTG
TTGTGTTTCATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCTCGGCTCTAATCCTAAAAGATGAACACTTGGTGACTCCACCAGATTTATCAGTAAGGGTTATCTGGTGTAAACCCAAGACTTCCCTAGGATTATTTTCTCTTGT
CATCTATTGGTGGTTTCATTGTTGGACTAAGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACAC
TGCCAACGTCTGCTGAAAGTTCCAGATCAAGCACCAGTTATTTTCAAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTTACAGGTTTTTCAGGGATTCCGCTGTG
TTGTGTTTCATGTAG
Protein sequenceShow/hide protein sequence
MRSALILKDEHLVTPPDLSVRVIWCKPKTSLGLFSLVIYWWFHCWTKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSTSYFQNRVMSGRHLVYVYRFFRDSAV
LCFM