; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold1:43325841..43330389
RNA-Seq ExpressionSpg019236
SyntenySpg019236
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]7.8e-1257.97Show/hide
Query:  VVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLT
        + TPM ELFEIL  +GYI VE   L    + YD+SL C +H G KGHS++QC  FR+KVQELLDS  LT
Subjt:  VVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLT

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]8.4e-1435.33Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH G +GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSSKKDMIKAHRQEREKRLARLESREPKYQMN
        +Q      Q   +D++E  S+ +    A+   + K L  L   +P+   N
Subjt:  SQKMVQLPQYGEVDIIEECSSKKDMIKAHRQEREKRLARLESREPKYQMN

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.1e-0553.23Show/hide
Query:  EEQSNEMEKTRKDIEELREKMDVILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRP
        +++ +E EKTRKDIEELREK+D IL+ALE+GK    IA++SN +++PP  Q   G  P +RP
Subjt:  EEQSNEMEKTRKDIEELREKMDVILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.1e-1344.68Show/hide
Query:  SKKDMIKAHRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS
        S+ D+I+    E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V++LPSFVN  S
Subjt:  SKKDMIKAHRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]3.8e-1445.26Show/hide
Query:  SKKDMIKAHRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        S+ D+I+    E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  SKKDMIKAHRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.7e-1441.67Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H G KGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECS
        +       Q   ++I+E+ S
Subjt:  SQKMVQLPQYGEVDIIEECS

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.2e-1525.97Show/hide
Query:  PDQQTEQAAREKECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQ
        PDQ  E+  +      L + N  L QENE+LQ E  Q +     L++EL + K  +  Q++LEK +  LD E R +N+    L+ +  + QAT++S+++ 
Subjt:  PDQQTEQAAREKECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQ

Query:  VLKQQSEIASLHELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYD
        +   ++      EL+ +L+  I  R   I ++E  N +L +T++ L +       ++ E   D K L+ +  SL+ +L  +Q+++++++++Y  LK  Y 
Subjt:  VLKQQSEIASLHELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYD

Query:  RLSDDFGFVRQNHATLRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNVLKTRIMEEQSNEMEKTRKDIEELREKMDVILVALERGKIIPD
        ++  D+   R++  TL  + +  +  +R V+RRA+  AE A  L       +P+S ++   R ++    E+    K                  GK++ +
Subjt:  RLSDDFGFVRQNHATLRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNVLKTRIMEEQSNEMEKTRKDIEELREKMDVILVALERGKIIPD

Query:  IAQSSNTMNDPPIRQSTEGTTPKYRPLYNIPVEQH
         AQSSN + D        G TP++         QH
Subjt:  IAQSSNTMNDPPIRQSTEGTTPKYRPLYNIPVEQH

TrEMBL top hitse value%identityAlignment
A0A1S4DX26 girdin-like2.5e-1126.18Show/hide
Query:  KECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASL
        K+  EL + N  L QENE+L+ E  Q +     L+ EL + K S+  Q++LEK +  LD+E R +N+    L+ +    +AT+ S ++ +   +S     
Subjt:  KECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASL

Query:  HELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQ
         E + +L   I +R   I ++E  N +L + ++ L L +  R ++        + L+ +  SL+ +L  +Q+++ ++ ++Y  LK  Y ++  D+    +
Subjt:  HELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQ

Query:  NHATLRSKAEHMLTQIRRVTRRADELAEDARTL
        +   L  + +  +  +R V++RA+  AE A  L
Subjt:  NHATLRSKAEHMLTQIRRVTRRADELAEDARTL

A0A5A7T6E2 Girdin-like1.4e-1124.69Show/hide
Query:  ELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELM
        EL + N  L QENE+L+ E  Q +     L+ +L + K  +  Q++LEK++  LD+E R +N+    L+ +    QAT+ S+++ +   ++      +L+
Subjt:  ELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELM

Query:  KELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQNHAT
         +L   I  R   I ++E +N +L +T++ L L       ++ E   + + L+ +  SL+ +L   Q+++ ++ ++Y  L   Y ++  D+    ++   
Subjt:  KELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQNHAT

Query:  LRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNV
        L  + +  +  +R V++RA++ AE A  L       QP++ ++
Subjt:  LRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNV

A0A5A7V9X6 Girdin-like1.2e-1024.9Show/hide
Query:  KVIPDQQTEQAAREKECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSR
        +V    +  QA R K   ++     S  QENE+L+ E  Q +     L+ EL + K  +  Q++LEK++  LD+E R +N+    L+ +    QAT+ S+
Subjt:  KVIPDQQTEQAAREKECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSR

Query:  NDQVLKQQSEIASLHELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKE
        N+ +   ++      E + +L   I  R   I ++E +N +L +T++ L L       ++ E   + + L+ +V+SL+ +L   Q+++ ++ ++Y  L  
Subjt:  NDQVLKQQSEIASLHELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKE

Query:  QYDRLSDDFGFVRQNHATLRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNV
         Y ++  D+    ++   L  + +  +  +R V++RA+  AE A  L       QP++ ++
Subjt:  QYDRLSDDFGFVRQNHATLRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNV

A0A5D3DJ95 Girdin-like1.5e-1326.75Show/hide
Query:  ELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELM
        EL + N  L QENE+L+ E  Q +     L+ EL + K  +  Q++LEK+I  LD+E R +N+   RL+ +    QAT+ S+++ +   ++      EL+
Subjt:  ELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELM

Query:  KELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQNHAT
         +L   I  R   I ++E +N +L +T++ L L +  R ++        + L+ +V SL+ +L   Q+++ ++ ++Y  L   Y ++  D+    ++   
Subjt:  KELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQNHAT

Query:  LRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNV
        L  + +  +  +R V++RA+  AE A  L       QP++ ++
Subjt:  LRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNV

A0A5D3DK34 Girdin-like2.5e-1126.18Show/hide
Query:  KECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASL
        K+  EL + N  L QENE+L+ E  Q +     L+ EL + K S+  Q++LEK +  LD+E R +N+    L+ +    +AT+ S ++ +   +S     
Subjt:  KECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASL

Query:  HELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQ
         E + +L   I +R   I ++E  N +L + ++ L L +  R ++        + L+ +  SL+ +L  +Q+++ ++ ++Y  LK  Y ++  D+    +
Subjt:  HELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGFVRQ

Query:  NHATLRSKAEHMLTQIRRVTRRADELAEDARTL
        +   L  + +  +  +R V++RA+  AE A  L
Subjt:  NHATLRSKAEHMLTQIRRVTRRADELAEDARTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCAAGATAAAACTTAATGCAAAGGTGATACCAGATCAACAGACAGAACAAGCAGCACGCGAAAAGGAATGTGATGAATTGAGAAAAGCTAATTCATCATTGGT
TCAAGAAAATGAAAGGCTGCAATTGGAGGTAAAACAAGGTTTGTTGCGCAATGTTGAACTAGAAAAAGAGTTGAACCGATTAAAGGGCAGTGTCAGCAAACAAGAACAGT
TAGAAAAGGAAATTTCAGCATTAGACAGAGAGGCCCGCGACCTGAACAGAAGAATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAAT
GACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTCCATGAGTTGATGAAAGAGCTCGAAGATTGCATTAGTTTGAGGAACCAAACGATTACTGAGGTAGAAGAAAA
GAATGGAACGCTATGTCGAACAATTAACGACCTGCAATTAACGCTCAAGATTAGAGAAGATCAACTAGGGGAGCTCATCAACGACAACAAGGGTCTAAGAGAGTTCGTTC
AGTCACTCAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGACAAATTAATGAAAGACTATACCTATCTAAAGGAGCAGTATGACAGATTGAGCGATGATTTTGGGTTT
GTGAGACAGAACCACGCGACACTACGAAGTAAAGCGGAACATATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTACTCTCTC
TAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCTCAAGACAAGGATCATGGAAGAGCAAAGTAATGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTAC
GAGAAAAAATGGATGTCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATTCGGCAATCAACAGAG
GGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACT
ACCTACAGAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAGTAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACG
ATGACAGTTTGATGTGTTCTTATCACACTGGGACAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACA
GTTTCTCAAAAGATGGTTCAACTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGCAAAAAAGATATGATTAAAGCACACAGACAGGAGAGAGAAAAACG
ACTGGCTAGATTGGAGAGTCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTG
CAATCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTGCCATCATTTGTT
AATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCAAGATAAAACTTAATGCAAAGGTGATACCAGATCAACAGACAGAACAAGCAGCACGCGAAAAGGAATGTGATGAATTGAGAAAAGCTAATTCATCATTGGT
TCAAGAAAATGAAAGGCTGCAATTGGAGGTAAAACAAGGTTTGTTGCGCAATGTTGAACTAGAAAAAGAGTTGAACCGATTAAAGGGCAGTGTCAGCAAACAAGAACAGT
TAGAAAAGGAAATTTCAGCATTAGACAGAGAGGCCCGCGACCTGAACAGAAGAATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAAT
GACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTCCATGAGTTGATGAAAGAGCTCGAAGATTGCATTAGTTTGAGGAACCAAACGATTACTGAGGTAGAAGAAAA
GAATGGAACGCTATGTCGAACAATTAACGACCTGCAATTAACGCTCAAGATTAGAGAAGATCAACTAGGGGAGCTCATCAACGACAACAAGGGTCTAAGAGAGTTCGTTC
AGTCACTCAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGACAAATTAATGAAAGACTATACCTATCTAAAGGAGCAGTATGACAGATTGAGCGATGATTTTGGGTTT
GTGAGACAGAACCACGCGACACTACGAAGTAAAGCGGAACATATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTACTCTCTC
TAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCTCAAGACAAGGATCATGGAAGAGCAAAGTAATGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTAC
GAGAAAAAATGGATGTCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATTCGGCAATCAACAGAG
GGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACT
ACCTACAGAGAGCGTAGTGACTCCCATGGGAGAACTATTCGAAATATTATTCAGTAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACG
ATGACAGTTTGATGTGTTCTTATCACACTGGGACAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACA
GTTTCTCAAAAGATGGTTCAACTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGCAAAAAAGATATGATTAAAGCACACAGACAGGAGAGAGAAAAACG
ACTGGCTAGATTGGAGAGTCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTG
CAATCATGGCTATAATCGAACAGAAGAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTGCCATCATTTGTT
AATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MKTKIKLNAKVIPDQQTEQAAREKECDELRKANSSLVQENERLQLEVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDREARDLNRRMHRLRRDNEVSQATLKSRN
DQVLKQQSEIASLHELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLREFVQSLNVRLGKYQDATDKLMKDYTYLKEQYDRLSDDFGF
VRQNHATLRSKAEHMLTQIRRVTRRADELAEDARTLSKVIAPTQPNSKNVLKTRIMEEQSNEMEKTRKDIEELREKMDVILVALERGKIIPDIAQSSNTMNDPPIRQSTE
GTTPKYRPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTESVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGTKGHSIDQCPHFRLKVQELLDSHFLT
VSQKMVQLPQYGEVDIIEECSSKKDMIKAHRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFV
NEISK