CuGenDBv2

Gene ID	Spg019243
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein POLYCHOME
Genome location	scaffold1:49268758..49271272
RNA-Seq Expression	Spg019243
Synteny	Spg019243
Gene Ontology terms	GO:0051783 - regulation of nuclear division (biological process) GO:1904667 - negative regulation of ubiquitin protein ligase activity (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KGN53824.1 hypothetical protein Csa_015343 [Cucumis sativus]

2.3e-30

82.22

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVD+AEVFARRRSEGILDE+EM +NLIGTPIARATTT TAQQ+PT   PGGGG NLRR+ GSPISGGIGRNRF YR+P L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

XP_004150162.1 protein POLYCHOME [Cucumis sativus]

2.3e-30

82.22

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVD+AEVFARRRSEGILDE+EM +NLIGTPIARATTT TAQQ+PT   PGGGG NLRR+ GSPISGGIGRNRF YR+P L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

XP_008460799.1 PREDICTED: protein POLYCHOME [Cucumis melo]

7.7e-31

83.33

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVD+AEVFARRRSEGILDE+EM +NLIGTPIARATTTT AQQ+PT   PGGGGANLRR+ GSPISGGIGRNRF YR+P L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

XP_022925136.1 protein POLYCHOME-like [Cucurbita moschata]

1.2e-28

84.04

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Query:  MSESRDRLERQVDHAEVFARRRSE-GILDEREMSTNLIGTPIARATTTTTAQQKPTTLRP---GGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSESRDRLERQVD+AEVFARRRSE GILDE+EMST LIGTPIARATTTTTAQQ+PT L P   GGGGA  RRS GSPISGGIGRNRF YRSP L
Subjt:  MSESRDRLERQVDHAEVFARRRSE-GILDEREMSTNLIGTPIARATTTTTAQQKPTTLRP---GGGGANLRRSLGSPISGGIGRNRFHYRSPYL

XP_038881398.1 protein POLYCHOME [Benincasa hispida]

2.0e-31

84.44

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVDHAEVFARRRSEGILDE+EM+++LIGTPIAR TTTTTAQQ+PT   PGGGGANLRR+ GSPISGGIGRNRF YRSP L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KY99 Uncharacterized protein

1.1e-30

82.22

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVD+AEVFARRRSEGILDE+EM +NLIGTPIARATTT TAQQ+PT   PGGGG NLRR+ GSPISGGIGRNRF YR+P L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

A0A1S3CDA1 protein POLYCHOME

3.7e-31

83.33

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVD+AEVFARRRSEGILDE+EM +NLIGTPIARATTTT AQQ+PT   PGGGGANLRR+ GSPISGGIGRNRF YR+P L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

A0A5D3BM43 Protein POLYCHOME

3.7e-31

83.33

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Query:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSE+RDRLERQVD+AEVFARRRSEGILDE+EM +NLIGTPIARATTTT AQQ+PT   PGGGGANLRR+ GSPISGGIGRNRF YR+P L
Subjt:  MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYL

A0A6J1EBD1 protein POLYCHOME-like

6.0e-29

84.04

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Query:  MSESRDRLERQVDHAEVFARRRSE-GILDEREMSTNLIGTPIARATTTTTAQQKPTTLRP---GGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSESRDRLERQVD+AEVFARRRSE GILDE+EMST LIGTPIARATTTTTAQQ+PT L P   GGGGA  RRS GSPISGGIGRNRF YRSP L
Subjt:  MSESRDRLERQVDHAEVFARRRSE-GILDEREMSTNLIGTPIARATTTTTAQQKPTTLRP---GGGGANLRRSLGSPISGGIGRNRFHYRSPYL

A0A6J1HRM8 protein POLYCHOME

7.8e-29

83.16

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Query:  MSESRDRLERQVDHAEVFARRRSE-GILDEREMSTNLIGTPIARATTTTTAQQKPTTLRP----GGGGANLRRSLGSPISGGIGRNRFHYRSPYL
        MSESRDRLERQVD+AEVFARRRSE GILDE+EMST LIGTPIARATTTTTAQQ+PT L P    GGGGA  RRS GSPISGGIGRNRF YRSP L
Subjt:  MSESRDRLERQVDHAEVFARRRSE-GILDEREMSTNLIGTPIARATTTTTAQQKPTTLRP----GGGGANLRRSLGSPISGGIGRNRFHYRSPYL

SwissProt top hits

e value

%identity

Alignment

O48533 Protein POLYCHOME

1.7e-04

39.13

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Query:  MSESRDRLERQVDHAEVFARRRSEGI-LDEREMSTNLIGTPIARATTTTTAQQKPTTLRPG---GGGANLRRSLGSPISGGIGRNRFHYRSP
        M E+RDR+ERQVD+   F  RRS GI LDE     NL G+P+ R  +  T      ++  G   G G  +R + G   +GG  R +  +RSP
Subjt:  MSESRDRLERQVDHAEVFARRRSEGI-LDEREMSTNLIGTPIARATTTTTAQQKPTTLRPG---GGGANLRRSLGSPISGGIGRNRFHYRSP

Arabidopsis top hits

e value

%identity

Alignment

AT2G42260.1 uv-b-insensitive 4

1.2e-05

39.13

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Query:  MSESRDRLERQVDHAEVFARRRSEGI-LDEREMSTNLIGTPIARATTTTTAQQKPTTLRPG---GGGANLRRSLGSPISGGIGRNRFHYRSP
        M E+RDR+ERQVD+   F  RRS GI LDE     NL G+P+ R  +  T      ++  G   G G  +R + G   +GG  R +  +RSP
Subjt:  MSESRDRLERQVDHAEVFARRRSEGI-LDEREMSTNLIGTPIARATTTTTAQQKPTTLRPG---GGGANLRRSLGSPISGGIGRNRFHYRSP

Sequences

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CDS sequence

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ATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACCATGCCGAGGTCTTTGCTCGTCGGAGATCGGAAGGTATATTGGACGAGCGAGAAATGAGTACTAATTTGAT
AGGAACTCCGATTGCACGCGCCACAACGACGACTACAGCTCAACAAAAACCTACGACTCTCAGGCCTGGAGGAGGTGGTGCGAATCTGAGACGCAGTTTAGGTTCTCCCA
TTTCCGGTGGAATTGGGCGTAATAGATTTCATTACAGATCTCCGTATCTAGTGGAATTTCCATGCCATTTGGTGAATTTGATTCATATGGTCTATGGCAAACCCATTCTC
ATTGTCATTGCATATCGTCTCTGGATTCCCATTTCAGGCGTTCAACTTATTTTGCTTTATCCTGCATGTGCCCATCTGGCCAAGCATTTCTCTGGTCACCCAAAAGCCAA
CGGTAGGCAAAGTGCTAAAGATTCTCCGTGGAATCGCAAACCAGAACGTGGGAGAATCCGAGATTCTCACCCCCCAGAAGAAGCTGCTGAACTCCATAGACAAAGTGGAG
AAAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACACCGAGTGCCAAGAGGGCAGAGAGACAAAAAAGAGTTCGAACTTTGATGTCCTTTCGTTGATACAGTTCAACACA
AACACTCCTAGAATTAGAGAGACCAGATCACGATCACGATCACGATCACATCATCATCAGAACTCAGATCAATCATCAGCTGATGACTACTTGGTCAAGAGCGCTCGTTG
A

mRNA sequence

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Protein sequence

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MSESRDRLERQVDHAEVFARRRSEGILDEREMSTNLIGTPIARATTTTTAQQKPTTLRPGGGGANLRRSLGSPISGGIGRNRFHYRSPYLVEFPCHLVNLIHMVYGKPIL
IVIAYRLWIPISGVQLILLYPACAHLAKHFSGHPKANGRQSAKDSPWNRKPERGRIRDSHPPEEAAELHRQSGESNGGAAEIEKDTECQEGRETKKSSNFDVLSLIQFNT
NTPRIRETRSRSRSRSHHHQNSDQSSADDYLVKSAR

Spg019243 (gene) of Sponge gourd (cylindrica) v1 genome