CuGenDBv2

Gene ID	Spg019247
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase CHFR
Genome location	scaffold1:48964496..49001252
RNA-Seq Expression	Spg019247
Synteny	Spg019247
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR040909 - E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603167.1 E3 ubiquitin-protein ligase CHFR, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-73

92.86

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Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRS TYATCNPETLKPIS RT+SRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

XP_022933097.1 E3 ubiquitin-protein ligase CHFR isoform X1 [Cucurbita moschata]

4.1e-73

92.86

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Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYW+AQRLQRS TYATCNPETLKPIS RTISRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

XP_022933098.1 E3 ubiquitin-protein ligase CHFR isoform X2 [Cucurbita moschata]

4.1e-73

92.86

Show/hide

Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYW+AQRLQRS TYATCNPETLKPIS RTISRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

XP_022933099.1 E3 ubiquitin-protein ligase CHFR isoform X3 [Cucurbita moschata]

4.1e-73

92.86

Show/hide

Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYW+AQRLQRS TYATCNPETLKPIS RTISRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

XP_023543046.1 E3 ubiquitin-protein ligase CHFR isoform X2 [Cucurbita pepo subsp. pepo]

9.1e-73

92.14

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Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRS TYA CNPETLKPIS RT+SRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EYT0 E3 ubiquitin-protein ligase CHFR isoform X3

2.0e-73

92.86

Show/hide

Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYW+AQRLQRS TYATCNPETLKPIS RTISRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

A0A6J1EYT3 E3 ubiquitin-protein ligase CHFR isoform X1

2.0e-73

92.86

Show/hide

Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYW+AQRLQRS TYATCNPETLKPIS RTISRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

A0A6J1F3R3 E3 ubiquitin-protein ligase CHFR isoform X2

2.0e-73

92.86

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Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYW+AQRLQRS TYATCNPETLKPIS RTISRIPQLTHENN+HEQDITERCISQMGK LQDV+SEWIVKFNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

A0A6J1HT32 E3 ubiquitin-protein ligase CHFR isoform X3

3.7e-72

91.43

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Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRS TYATCNPETLKPIS RT+SRIPQLTHENN+HEQDITERCISQMG  LQDV+SEWIVK NNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

A0A6J1HW48 E3 ubiquitin-protein ligase CHFR isoform X1

3.7e-72

91.43

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Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRS TYATCNPETLKPIS RT+SRIPQLTHENN+HEQDITERCISQMG  LQDV+SEWIVK NNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY
        TRMPLNH EMITA+T +CNECYDKLVGFLLYWFRISTPKY
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPKY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G47570.1 RING/U-box superfamily protein

2.5e-52

64.75

Show/hide

Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMP R ++ +P HC GCDR FCGAYW ++ + +  +   C  ET +PISERTI+RIP +THE NRHEQDIT+RCI+ M K + DVV+EW+  FNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPK
        +RMPLNHAE ITA T VCN+CYDKLVGFLLYWFRI+ P+
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPK

AT1G47570.2 RING/U-box superfamily protein

2.5e-52

64.75

Show/hide

Query:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR
        MMP R ++ +P HC GCDR FCGAYW ++ + +  +   C  ET +PISERTI+RIP +THE NRHEQDIT+RCI+ M K + DVV+EW+  FNNREIDR
Subjt:  MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDR

Query:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPK
        +RMPLNHAE ITA T VCN+CYDKLVGFLLYWFRI+ P+
Subjt:  TRMPLNHAEMITADTLVCNECYDKLVGFLLYWFRISTPK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATGCCTTCTCGATTTGATATTGGGATACCTCAACATTGTTTAGGATGTGACAGAGCATTTTGTGGTGCATATTGGCAAGCTCAGAGGTTACAAAGAAGTCGTACTTA
TGCCACTTGCAATCCCGAGACTCTTAAACCCATCTCTGAACGTACAATCTCAAGAATTCCACAGTTAACACATGAAAATAATCGGCATGAACAGGATATTACAGAGAGGT
GCATTAGTCAGATGGGTAAAGCATTGCAGGATGTCGTCTCGGAATGGATTGTAAAGTTTAACAATAGGGAAATTGATCGAACGCGAATGCCTCTAAACCATGCGGAGATG
ATAACTGCAGATACGCTTGTTTGCAACGAGTGTTATGACAAATTGGTGGGATTTCTCCTCTACTGGTTTCGCATTTCAACACCAAAATATCCAAGGAGTCGCGCGCGCCC
TCTTCGCACGTACAACAGCGTGTCTGCGTCTGCGTCTCCTTCGCGCGAACTCTTCTCTTCGCACGTTCGTAGGTTGCTCGTTCGCCGACTGTCAGTTTCGCATCTCAGTC
CGCGCCTCAGTCTTCACTCATCCGTCAGTTTGCCGCCGATTGCTACCGTCAGTTTGCCGTCGCTCACTTTCATTCACACGCTCGTGCTGTTTCTTCGTGACGTCGCATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MMPSRFDIGIPQHCLGCDRAFCGAYWQAQRLQRSRTYATCNPETLKPISERTISRIPQLTHENNRHEQDITERCISQMGKALQDVVSEWIVKFNNREIDRTRMPLNHAEM
ITADTLVCNECYDKLVGFLLYWFRISTPKYPRSRARPLRTYNSVSASASPSRELFSSHVRRLLVRRLSVSHLSPRLSLHSSVSLPPIATVSLPSLTFIHTLVLFLRDVA

Spg019247 (gene) of Sponge gourd (cylindrica) v1 genome