; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019271 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019271
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold1:49911389..49919371
RNA-Seq ExpressionSpg019271
SyntenySpg019271
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG68750.1 hypothetical protein EZV62_003685 [Acer yangbiense]6.7e-2056.82Show/hide
Query:  LDTAQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQS
        L  +Q   ++K+G T+ QYL Q K++VDKF+AIGEPLSYRDHL Y+LEGLG EY+ FVT ++NR  +PS+ DV  LLL++E RL K++
Subjt:  LDTAQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQS

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]1.7e-2657.14Show/hide
Query:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS
        + Q+++KDGL+++QYL++IK++  K S+IGEP+S +DH++YI+EGLG EYN FVT +QNR+   +L DVR LLLAY+ RLEKQ+SVD LN+VQAN+AN  
Subjt:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS

Query:  ISSSS
        ++  S
Subjt:  ISSSS

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]3.2e-3060.55Show/hide
Query:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS
        + Q +RKDG +++QYL++IK++ DKF+A+GEPLSYRDHLA++L+GLG+EYN FVT + NR   PSL DVR LLLAYEARL+KQ++VD LN+ QANL N S
Subjt:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS

Query:  ISSSSRCSP
        +  +S+  P
Subjt:  ISSSSRCSP

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]1.4e-3364.91Show/hide
Query:  AQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANF
        +Q QKI+KDGLT++QYL+QIKDV+D F+AIGEPLSYRDHL+YILEGLG+EYN FV+ + NRT +PS+ADVR LL+ Y++RLEKQ++ D L L+QAN+A+ 
Subjt:  AQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANF

Query:  SISSSSRCSPRQQH
        SI+S +R    QQH
Subjt:  SISSSSRCSPRQQH

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]4.8e-2658.88Show/hide
Query:  AQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANF
        A+ QKIRKD L+++QYLSQIKDV DKFS +GE +SYRDHL +IL+GLG+EYN FVT +QN     S+ DV  LLL+YEA+LEKQ+++D LN+ QA L+  
Subjt:  AQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANF

Query:  SISSSSR
        S   +S+
Subjt:  SISSSSR

TrEMBL top hitse value%identityAlignment
A0A5C7IHH0 Uncharacterized protein3.3e-2056.82Show/hide
Query:  LDTAQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQS
        L  +Q   ++K+G T+ QYL Q K++VDKF+AIGEPLSYRDHL Y+LEGLG EY+ FVT ++NR  +PS+ DV  LLL++E RL K++
Subjt:  LDTAQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQS

A0A6J1D6N7 uncharacterized protein LOC1110174388.0e-2757.14Show/hide
Query:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS
        + Q+++KDGL+++QYL++IK++  K S+IGEP+S +DH++YI+EGLG EYN FVT +QNR+   +L DVR LLLAY+ RLEKQ+SVD LN+VQAN+AN  
Subjt:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS

Query:  ISSSS
        ++  S
Subjt:  ISSSS

A0A6J1DQX7 uncharacterized protein LOC1110223151.6e-3060.55Show/hide
Query:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS
        + Q +RKDG +++QYL++IK++ DKF+A+GEPLSYRDHLA++L+GLG+EYN FVT + NR   PSL DVR LLLAYEARL+KQ++VD LN+ QANL N S
Subjt:  QTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS

Query:  ISSSSRCSP
        +  +S+  P
Subjt:  ISSSSRCSP

A0A7J0DER3 Uncharacterized protein1.0e-1848.98Show/hide
Query:  QKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS
        Q I+KDGLT   Y+ + + + +  ++IGEP++Y DHL Y L GLG +YN FVT +Q++  +PS+ +V  LLL+Y+ARLE+QS+ D+L+ +QANLAN +
Subjt:  QKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS

A0A7J0E8R3 Uncharacterized protein1.0e-1848.98Show/hide
Query:  QKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS
        Q I+KDGLT   Y+ + + + +  ++IGEP++Y DHL Y L GLG +YN FVT +Q++  +PS+ +V  LLL+Y+ARLE+QS+ D+L+ +QANLAN +
Subjt:  QKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEARLEKQSSVDSLNLVQANLANFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCATCGAAGCCACGAAGGATTGAAAAGGCCGCAACAAGAGGGGAGCCTAATCGGAGTGGCGAGGGAATGTGATATTGCAGTCCGAAGAGAGGTGCAGCAAAATGA
AAATGTTGATACTGCACAACAAGAAGAGAAGATGAAGAAGAAAAACCAGGGAATGAACATACCCATGGACTGTTTGGTGATTACTCATTATTATAAAGTGGAGTTTGGAT
TGCATCGCCCTAACCTAAATTCCTCCACCCCGATATCTACTGTATTTACTCGTCCTCTCAACCCTAATGTTCCTCCCTCCACCACCGGCCTTCACCCTGGCCCTATTCAA
CATCCTGGCCTCACTACTTCTTCTCCGATGCCGACGACCTCGTCTGCTTTTATCAATGGTACCCCTGCTCCGCAACAATTCTTGGATACGGCTCAGACCCAGAAAATTCG
TAAGGATGGTCTTACCATGACTCAGTACCTTTCTCAGATCAAGGATGTTGTCGACAAGTTCTCTGCCATCGGTGAGCCGCTGTCTTATCGTGATCATCTCGCCTACATTT
TGGAAGGTCTGGGAACAGAATACAATCTGTTCGTAACCTTTGTCCAAAATCGCACTGGTCAACCCTCTCTTGCTGATGTTCGCATTCTCCTTTTAGCATATGAAGCACGT
CTTGAGAAGCAATCTTCGGTGGATAGCTTAAATCTGGTTCAAGCCAACTTAGCCAATTTCTCCATATCTTCATCCTCCAGATGCTCTCCACGCCAACAACATTTGTCTAG
ATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAAGAGAGTGAAAAGGAGTACGATGGTGGAGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCATCGAAGCCACGAAGGATTGAAAAGGCCGCAACAAGAGGGGAGCCTAATCGGAGTGGCGAGGGAATGTGATATTGCAGTCCGAAGAGAGGTGCAGCAAAATGA
AAATGTTGATACTGCACAACAAGAAGAGAAGATGAAGAAGAAAAACCAGGGAATGAACATACCCATGGACTGTTTGGTGATTACTCATTATTATAAAGTGGAGTTTGGAT
TGCATCGCCCTAACCTAAATTCCTCCACCCCGATATCTACTGTATTTACTCGTCCTCTCAACCCTAATGTTCCTCCCTCCACCACCGGCCTTCACCCTGGCCCTATTCAA
CATCCTGGCCTCACTACTTCTTCTCCGATGCCGACGACCTCGTCTGCTTTTATCAATGGTACCCCTGCTCCGCAACAATTCTTGGATACGGCTCAGACCCAGAAAATTCG
TAAGGATGGTCTTACCATGACTCAGTACCTTTCTCAGATCAAGGATGTTGTCGACAAGTTCTCTGCCATCGGTGAGCCGCTGTCTTATCGTGATCATCTCGCCTACATTT
TGGAAGGTCTGGGAACAGAATACAATCTGTTCGTAACCTTTGTCCAAAATCGCACTGGTCAACCCTCTCTTGCTGATGTTCGCATTCTCCTTTTAGCATATGAAGCACGT
CTTGAGAAGCAATCTTCGGTGGATAGCTTAAATCTGGTTCAAGCCAACTTAGCCAATTTCTCCATATCTTCATCCTCCAGATGCTCTCCACGCCAACAACATTTGTCTAG
ATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAAGAGAGTGAAAAGGAGTACGATGGTGGAGAGGTGA
Protein sequenceShow/hide protein sequence
MHHRSHEGLKRPQQEGSLIGVARECDIAVRREVQQNENVDTAQQEEKMKKKNQGMNIPMDCLVITHYYKVEFGLHRPNLNSSTPISTVFTRPLNPNVPPSTTGLHPGPIQ
HPGLTTSSPMPTTSSAFINGTPAPQQFLDTAQTQKIRKDGLTMTQYLSQIKDVVDKFSAIGEPLSYRDHLAYILEGLGTEYNLFVTFVQNRTGQPSLADVRILLLAYEAR
LEKQSSVDSLNLVQANLANFSISSSSRCSPRQQHLSRCLVFGYVLVVCGKRVKRSTMVER