; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019273 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019273
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold1:47901987..47903207
RNA-Seq ExpressionSpg019273
SyntenySpg019273
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]7.4e-1846.45Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILKIKWW
        MS DQYAMDLGFT VTRSR+R++ IR     ESST PP+PS NL+RPSGGVVQMR PVSP+S   SS P  +TYSQAVTP+K                  
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILKIKWW

Query:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ
                                             +SKLLAALAQ T+DADFQ
Subjt:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]1.1e-3266.39Show/hide
Query:  PPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEK----SNQPQYKTITKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQMRP  S +S   SS P S+TYSQ VTP+K    ++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEK----SNQPQYKTITKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]2.0e-1850.35Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IKW
        MS DQYAMDLGFT VTRSR+R++ IR   S ESST PPRPSANL+RP GG VQMRPP SP+S   SS P  +TYSQ VTP+K   P+ +  +   K I  
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IKW

Query:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN
        +D      +Q+ TL K V + F  N  L   D+++   F++
Subjt:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]9.1e-2450.96Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNS-RIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IK
        MSVDQYAMDLG+T V +SR++++GI     MESST PPRPS NL+ P G V+QMR   SP+S R  S++P  +TYSQAVTP+K   P+ +  +   K I 
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNS-RIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IK

Query:  WWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ
         +D           ++  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQ
Subjt:  WWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ

TYK19576.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.0e-1938.41Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSS---------STYSQAVTPEKSNQPQYKTI
        MS + YAMDL F  V+R R  +A     +  +SS+ PP PS  L+RPSG       P +PN R  S   SS         S+YSQ V P+      +K +
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSS---------STYSQAVTPEKSNQPQYKTI

Query:  TKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ
        +K L+IKWW+KFN+ N  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +F+
Subjt:  TKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ

TrEMBL top hitse value%identityAlignment
A0A5A7U8A0 Uncharacterized protein3.6e-1846.45Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILKIKWW
        MS DQYAMDLGFT VTRSR+R++ IR     ESST PP+PS NL+RPSGGVVQMR PVSP+S   SS P  +TYSQAVTP+K                  
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILKIKWW

Query:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ
                                             +SKLLAALAQ T+DADFQ
Subjt:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ

A0A5A7UZX0 Polyprotein5.2e-3366.39Show/hide
Query:  PPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEK----SNQPQYKTITKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQMRP  S +S   SS P S+TYSQ VTP+K    ++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEK----SNQPQYKTITKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

A0A5D3BI61 Uncharacterized protein4.4e-2450.96Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNS-RIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IK
        MSVDQYAMDLG+T V +SR++++GI     MESST PPRPS NL+ P G V+QMR   SP+S R  S++P  +TYSQAVTP+K   P+ +  +   K I 
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNS-RIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IK

Query:  WWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ
         +D           ++  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQ
Subjt:  WWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ

A0A5D3BM67 Uncharacterized protein9.5e-1950.35Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IKW
        MS DQYAMDLGFT VTRSR+R++ IR   S ESST PPRPSANL+RP GG VQMRPP SP+S   SS P  +TYSQ VTP+K   P+ +  +   K I  
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILK-IKW

Query:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN
        +D      +Q+ TL K V + F  N  L   D+++   F++
Subjt:  WDKF---NFQNATLNK-VKEWFAANGYLQDIDIKRNAEFLN

A0A5D3D7N3 Retrotransposable element Tf25.0e-2038.41Show/hide
Query:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSS---------STYSQAVTPEKSNQPQYKTI
        MS + YAMDL F  V+R R  +A     +  +SS+ PP PS  L+RPSG       P +PN R  S   SS         S+YSQ V P+      +K +
Subjt:  MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSS---------STYSQAVTPEKSNQPQYKTI

Query:  TKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ
        +K L+IKWW+KFN+ N  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +F+
Subjt:  TKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTGATCAATATGCAATGGATCTAGGGTTTACCCCGGTAACCCGATCTAGAGCACGAACGGCCGGCATACGACCGATGCTTTCAATGGAGTCATCTACTCCACC
TCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCCGGCGGAGTCGTTCAAATGAGACCTCCTGTCTCACCCAATTCAAGGATAGGATCATCGATCCCATCATCTTCGACAT
ATTCTCAGGCGGTAACACCAGAAAAGAGCAATCAACCACAATACAAGACCATCACAAAGATCCTCAAGATCAAATGGTGGGATAAATTTAATTTCCAAAACGCCACCCTC
AACAAGGTAAAGGAGTGGTTTGCAGCAAACGGATATCTTCAAGATATTGACATCAAGAGGAATGCAGAGTTCCTCAATGACAAATCCAAGCTTCTGGCAGCTCTTGCACA
GACGACATCTGATGCAGACTTCCAGAGTGGTCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGACGAGACCGAGTGGGGGGCTGGGGACATGATAACACAAGATGGA
ATTCACTCCTTTCCACTTCTAGGAGGAGTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTGATCAATATGCAATGGATCTAGGGTTTACCCCGGTAACCCGATCTAGAGCACGAACGGCCGGCATACGACCGATGCTTTCAATGGAGTCATCTACTCCACC
TCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCCGGCGGAGTCGTTCAAATGAGACCTCCTGTCTCACCCAATTCAAGGATAGGATCATCGATCCCATCATCTTCGACAT
ATTCTCAGGCGGTAACACCAGAAAAGAGCAATCAACCACAATACAAGACCATCACAAAGATCCTCAAGATCAAATGGTGGGATAAATTTAATTTCCAAAACGCCACCCTC
AACAAGGTAAAGGAGTGGTTTGCAGCAAACGGATATCTTCAAGATATTGACATCAAGAGGAATGCAGAGTTCCTCAATGACAAATCCAAGCTTCTGGCAGCTCTTGCACA
GACGACATCTGATGCAGACTTCCAGAGTGGTCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGACGAGACCGAGTGGGGGGCTGGGGACATGATAACACAAGATGGA
ATTCACTCCTTTCCACTTCTAGGAGGAGTAGATGA
Protein sequenceShow/hide protein sequence
MSVDQYAMDLGFTPVTRSRARTAGIRPMLSMESSTPPPRPSANLVRPSGGVVQMRPPVSPNSRIGSSIPSSSTYSQAVTPEKSNQPQYKTITKILKIKWWDKFNFQNATL
NKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQSGLHADSISLPSWGRDRVGGWGHDNTRWNSLLSTSRRSR