; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019311 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019311
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:46517038..46518714
RNA-Seq ExpressionSpg019311
SyntenySpg019311
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032751.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-2126.79Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KESR +R+  R   +Q  K KKK+R+ K V EE +DF      +TLA++FP RFL D Q E    V C  
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------
        ++  +++ +P           DLS F++  LLSLPQE K+                                                            
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------

Query:  -----------------------------------------------------------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKG
                                                                          EASTS  K  ++  +K S  PILRYV LSR KKG
Subjt:  -----------------------------------------------------------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKG

Query:  ESPFTECSESIK--------------------------------------------------------------------KKFLKECYSLPTTRKGLGYK
        +SPF +    +K                                                                    KK L+E +++P +RKGL YK
Subjt:  ESPFTECSESIK--------------------------------------------------------------------KKFLKECYSLPTTRKGLGYK

Query:  SPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
        SPE +RI R+G  KV D+NHITV+EVD  +EKE
Subjt:  SPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.6e-2045.32Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K KKK+R+ K + EE +DF    + +TLA++FP RFL D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAK
        ++ +E++++P  S        DLS F++ DLLSLPQE K
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAK

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]2.7e-0962.5Show/hide
Query:  SIKKKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
        S +KK L+E + +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD  +E E
Subjt:  SIKKKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-2530Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVT---
        SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V E+ +DF    + +TLA++FP RFL D Q E    V    
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVT---

Query:  --------------CHIVDVVEDD--------DVPASSSGTV----------------------------------------------------------
                      C  +D  ++D        + P   SG V                                                          
Subjt:  --------------CHIVDVVEDD--------DVPASSSGTV----------------------------------------------------------

Query:  ---AGPGDLS----------SFSIKDLLSLPQEAKSG-------EASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK----------
             P  +S          +  +K L S      +G       EASTS AK  +V DEK S  PILRYVPLSRRKKGESPF E  + +K          
Subjt:  ---AGPGDLS----------SFSIKDLLSLPQEAKSG-------EASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK----------

Query:  -------------------------------------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKA
                                                                           KK L+E +++P +RKGLGYK PEP+RI R+GK 
Subjt:  -------------------------------------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKA

Query:  KVADTNHITVEEVDDSKEKE
        KV D+NHITV+EVD  +EKE
Subjt:  KVADTNHITVEEVDDSKEKE

KAA0063066.1 uncharacterized protein E6C27_scaffold468G001830 [Cucumis melo var. makuwa]2.6e-2831.82Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        S+EK  SIE+++EGW +V RRKK+K +   K+S L        K+QK K KK +R+ K V EE++DF  P + +TL ++FP RF  D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSL------------------------------------------------------------------
        ++  E++ +P  S        DLS F++ DLLSL                                                                  
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSL------------------------------------------------------------------

Query:  ---------------------PQEAKSGEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK--------------------------
                             P E   GEASTS  K  ++ DEK S  PIL Y+PLSR KKGESPF +  + +K                          
Subjt:  ---------------------PQEAKSGEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK--------------------------

Query:  --------------------KKFLKECYSLPT-TRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
                            K  +K  Y   T T KGLGY+SPEP+RIIR+GK KV D NHIT+EEVD  +EKE
Subjt:  --------------------KKFLKECYSLPT-TRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-2325.76Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++E WT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+R+ K + +E +DF    + ITLA++FP RFL D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------
        ++  E++ +P  S        DLS F++ DLLSLPQE K+                                                            
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
                         EASTS AK  ++ DEK S   ILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ----------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ----------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
                                                KK L+E +++P +RKGLGYK PEP+RI R+GK K+ D+NHITV+EVD  KEKE
Subjt:  ----------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

TrEMBL top hitse value%identityAlignment
A0A5A7V9E7 Uncharacterized protein1.3e-2831.82Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        S+EK  SIE+++EGW +V RRKK+K +   K+S L        K+QK K KK +R+ K V EE++DF  P + +TL ++FP RF  D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSL------------------------------------------------------------------
        ++  E++ +P  S        DLS F++ DLLSL                                                                  
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSL------------------------------------------------------------------

Query:  ---------------------PQEAKSGEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK--------------------------
                             P E   GEASTS  K  ++ DEK S  PIL Y+PLSR KKGESPF +  + +K                          
Subjt:  ---------------------PQEAKSGEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK--------------------------

Query:  --------------------KKFLKECYSLPT-TRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
                            K  +K  Y   T T KGLGY+SPEP+RIIR+GK KV D NHIT+EEVD  +EKE
Subjt:  --------------------KKFLKECYSLPT-TRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

A0A5D3BE72 Ty3-gypsy retrotransposon protein7.5e-2146.04Show/hide
Query:  QEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIV
        QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+++ K + EE +DF    + +TLA +FP RFL D Q E  E V CH +
Subjt:  QEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIV

Query:  DVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS
        D +E++ +P  S        DL  F++ DLLSLPQE K+
Subjt:  DVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS

A0A5D3BG93 Ty3-gypsy retrotransposon protein2.0e-2126.79Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++EGWT+V RRKK+K +  +KESR +R+  R   +Q  K KKK+R+ K V EE +DF      +TLA++FP RFL D Q E    V C  
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------
        ++  +++ +P           DLS F++  LLSLPQE K+                                                            
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------

Query:  -----------------------------------------------------------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKG
                                                                          EASTS  K  ++  +K S  PILRYV LSR KKG
Subjt:  -----------------------------------------------------------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKG

Query:  ESPFTECSESIK--------------------------------------------------------------------KKFLKECYSLPTTRKGLGYK
        +SPF +    +K                                                                    KK L+E +++P +RKGL YK
Subjt:  ESPFTECSESIK--------------------------------------------------------------------KKFLKECYSLPTTRKGLGYK

Query:  SPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
        SPE +RI R+G  KV D+NHITV+EVD  +EKE
Subjt:  SPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

A0A5D3BY54 Ty3-gypsy retrotransposon protein7.8e-2630Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVT---
        SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+QK K KKK+R+ K V E+ +DF    + +TLA++FP RFL D Q E    V    
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVT---

Query:  --------------CHIVDVVEDD--------DVPASSSGTV----------------------------------------------------------
                      C  +D  ++D        + P   SG V                                                          
Subjt:  --------------CHIVDVVEDD--------DVPASSSGTV----------------------------------------------------------

Query:  ---AGPGDLS----------SFSIKDLLSLPQEAKSG-------EASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK----------
             P  +S          +  +K L S      +G       EASTS AK  +V DEK S  PILRYVPLSRRKKGESPF E  + +K          
Subjt:  ---AGPGDLS----------SFSIKDLLSLPQEAKSG-------EASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK----------

Query:  -------------------------------------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKA
                                                                           KK L+E +++P +RKGLGYK PEP+RI R+GK 
Subjt:  -------------------------------------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKA

Query:  KVADTNHITVEEVDDSKEKE
        KV D+NHITV+EVD  +EKE
Subjt:  KVADTNHITVEEVDDSKEKE

A0A5D3C0W6 Ty3-gypsy retrotransposon protein9.5e-2425.76Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI
        SQEK   IE+++E WT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+R+ K + +E +DF    + ITLA++FP RFL D Q E    V CH 
Subjt:  SQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHI

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------
        ++  E++ +P  S        DLS F++ DLLSLPQE K+                                                            
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKS------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
                         EASTS AK  ++ DEK S   ILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ----------------GEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ----------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE
                                                KK L+E +++P +RKGLGYK PEP+RI R+GK K+ D+NHITV+EVD  KEKE
Subjt:  ----------------------------------------KKFLKECYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTCCTC
CACAACCCATAACTTTGGCGGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGTTGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGCATC
TACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAAATCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTG
AATGTTCAGAAAGCATAAAGAAGAAATTTCTAAAGGAATGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGA
GGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTCCTC
CACAACCCATAACTTTGGCGGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGTTGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGCATC
TACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAAATCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTG
AATGTTCAGAAAGCATAAAGAAGAAATTTCTAAAGGAATGTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGA
GGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGTGTCGACTAA
Protein sequenceShow/hide protein sequence
MKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDD
DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSGEASTSLAKPKVVKDEKCSKSPILRYVPLSRRKKGESPFTECSESIKKKFLKECYSLPTTRKGLGYKSPEPVRIIRR
GKAKVADTNHITVEEVDDSKEKESVD