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Spg019323 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019323
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold1:41913462..41916817
RNA-Seq ExpressionSpg019323
SyntenySpg019323
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.1e-1544.52Show/hide
Query:  LFCLSYTKGTKRAQDFRANQEDVWFSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIE
        L+CLS       +  F  N   + FS  F   W ++V   +L   E       PR NR SL+T +L KT   +          LL L+VL DNDA+VEIE
Subjt:  LFCLSYTKGTKRAQDFRANQEDVWFSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIE

Query:  LPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLASGPGGGVT
        LPV DTLP SAESS S+S S         + EDDV WLH +FR K A GPGGGVT
Subjt:  LPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLASGPGGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.9e-1754.95Show/hide
Query:  RFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLA
        + +  RPR NR SL+T KL KT              L  LSVLRDNDAVVEIELPV DTLPTSAES +S+S ST        +  DDV WLHA+FR K A
Subjt:  RFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLA

Query:  SGPGGGVTCKV
         GPGGGVT  +
Subjt:  SGPGGGVTCKV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1563.41Show/hide
Query:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV
        PL  LSVLRDNDAVVEIELPV DTLPTSAESS+S+SS+  +        E  W++  + EDDV WLHA+FR K A GPGGGV
Subjt:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]1.1e-1450Show/hide
Query:  FSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQE
        F  V R  W ++V + +L   E       PR NRSSL+T KL KT             PL MLSVLRDND VVEIELPV DT PTSAESS+S+SSS    
Subjt:  FSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQE

Query:  GQWVSLEEDDVHWLHAIFRTKL
             +  DDV WLHA+FR K+
Subjt:  GQWVSLEEDDVHWLHAIFRTKL

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1563.41Show/hide
Query:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV
        PL  LSVLRDNDAVVEIELPV DTLPTSAESS+S+SS+  +        E  W++  + EDDV WLHA+FR K A GPGGGV
Subjt:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase3.9e-1563.41Show/hide
Query:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV
        PL  LSVLRDNDAVVEIELPV DTLPTSAESS+S+SS+  +        E  W++  + EDDV WLHA+FR K A GPGGGV
Subjt:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.9e-1754.95Show/hide
Query:  RFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLA
        + +  RPR NR SL+T KL KT              L  LSVLRDNDAVVEIELPV DTLPTSAES +S+S ST        +  DDV WLHA+FR K A
Subjt:  RFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLA

Query:  SGPGGGVTCKV
         GPGGGVT  +
Subjt:  SGPGGGVTCKV

A0A5D3BQ75 Uncharacterized protein5.1e-1550Show/hide
Query:  FSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQE
        F  V R  W ++V + +L   E       PR NRSSL+T KL KT             PL MLSVLRDND VVEIELPV DT PTSAESS+S+SSS    
Subjt:  FSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQE

Query:  GQWVSLEEDDVHWLHAIFRTKL
             +  DDV WLHA+FR K+
Subjt:  GQWVSLEEDDVHWLHAIFRTKL

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.0e-1544.52Show/hide
Query:  LFCLSYTKGTKRAQDFRANQEDVWFSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIE
        L+CLS       +  F  N   + FS  F   W ++V   +L   E       PR NR SL+T +L KT   +          LL L+VL DNDA+VEIE
Subjt:  LFCLSYTKGTKRAQDFRANQEDVWFSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIE

Query:  LPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLASGPGGGVT
        LPV DTLP SAESS S+S S         + EDDV WLH +FR K A GPGGGVT
Subjt:  LPVFDTLPTSAESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLASGPGGGVT

A0A5D3DX39 Reverse transcriptase3.9e-1563.41Show/hide
Query:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV
        PL  LSVLRDNDAVVEIELPV DTLPTSAESS+S+SS+  +        E  W++  + EDDV WLHA+FR K A GPGGGV
Subjt:  PLLMLSVLRDNDAVVEIELPVFDTLPTSAESSKSSSSSTFQ--------EGQWVS--LEEDDVHWLHAIFRTKLASGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGTTCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAGATTCCTGTGCGCTCAACTCTTGTTGTTCTTTTTCTTTCGTCTTTGTTCCTTCCTTCGACGACGAA
AGGTTCTTTCTATCTTCGGATCAATGTCAAGGAGTGGATACCCCTTGTTCATGCACTAACTTCAACCTGCAAAACAAATGCAAACCAAAAGCACTTGAGGGAGAGAGTGA
AGGAAGAAGAAGAAGAAGAATTTTGGGGTTTTGAGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACATATCAACCTCTGGTTTT
TTATTCTGTTTGAGCTACACAAAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATGTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGT
TGAATCAGAATCTCTATTTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTCGAGTCTAAAGACCTGGAAACTAGCTAAGACTCCCGAGGCTATAT
GGTACCGTGTGGACACAGGTTATATTCCGTTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATTGAGCTCCCGGTGTTTGATACACTGCCAACGTCT
GCTGAAAGTTCCAAATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGC
AAGTGGTCCGGGAGGGGGTGTGACATGCAAAGTCTAA
mRNA sequenceShow/hide mRNA sequence
GAGGTTCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAGATTCCTGTGCGCTCAACTCTTGTTGTTCTTTTTCTTTCGTCTTTGTTCCTTCCTTCGACGACGAA
AGGTTCTTTCTATCTTCGGATCAATGTCAAGGAGTGGATACCCCTTGTTCATGCACTAACTTCAACCTGCAAAACAAATGCAAACCAAAAGCACTTGAGGGAGAGAGTGA
AGGAAGAAGAAGAAGAAGAATTTTGGGGTTTTGAGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACATATCAACCTCTGGTTTT
TTATTCTGTTTGAGCTACACAAAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATGTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGT
TGAATCAGAATCTCTATTTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTCGAGTCTAAAGACCTGGAAACTAGCTAAGACTCCCGAGGCTATAT
GGTACCGTGTGGACACAGGTTATATTCCGTTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATTGAGCTCCCGGTGTTTGATACACTGCCAACGTCT
GCTGAAAGTTCCAAATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGC
AAGTGGTCCGGGAGGGGGTGTGACATGCAAAGTCTAA
Protein sequenceShow/hide protein sequence
EVPLETLECKMLPLEIPVRSTLVVLFLSSLFLPSTTKGSFYLRINVKEWIPLVHALTSTCKTNANQKHLRERVKEEEEEEFWGFELKKIGKAHAKPAIAESEFNISTSGF
LFCLSYTKGTKRAQDFRANQEDVWFSLVFRAFWGVQVESESLFGWESRFHFFRPRENRSSLKTWKLAKTPEAIWYRVDTGYIPLLMLSVLRDNDAVVEIELPVFDTLPTS
AESSKSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLASGPGGGVTCKV