; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019334 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019334
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:46309697..46316569
RNA-Seq ExpressionSpg019334
SyntenySpg019334
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032650.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-2958.33Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N +   SKEV+N  +  QRTSVF+RIKP TT+  VFQR+S+A  +EENQCL    TR S  +RLS+STSKK RPSTS FDCLK+T+DQ +R++ +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F E N D+K+HS +PSHMKRK FV INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

KAA0048558.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-2859.85Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N +   SKEV+N     QRTSVF+RIKP TTR SVFQR+S+A  +EENQC     TR SA +RLS+STSKK RPSTS FD LK+T+DQ +R+M +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F + N D+K+HS IPSHMKRK FV INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

KAA0062458.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-2857.58Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N  ++ SKEVD   + ++RTS+F+RIKP TTR SVFQR+S+A  +EENQC  S STR SA +RLS+STSKK RPSTSVF+ LK+T+DQ +R+  +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F E N D+K+HS +PSHMKR   V INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-2861.48Show/hide
Query:  KEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLELKLFDEVNRD
        +EVDN  + +QRTSVF+RIKP TTR SVFQR+S+A  +E+NQC  ST TR SA +RLS+STSKK RPSTS FD +K+ +DQ +R+M +L+ K F E N D
Subjt:  KEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLELKLFDEVNRD

Query:  EKLHSSIPSHMKRKFFVLINTE
        +K+HS +PS MKRK FV INTE
Subjt:  EKLHSSIPSHMKRKFFVLINTE

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-2857.58Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N  ++ SKEVD   + ++RTS+F+RIKP TTR SVFQR+S+A  +EENQC  S STR SA +RLS+STSKK RPSTSVF+ LK+T+DQ +R+  +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F E N D+K+HS +PSHMKR   V INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

TrEMBL top hitse value%identityAlignment
A0A5A7SP56 Retrotransposon gag protein3.2e-2958.33Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N +   SKEV+N  +  QRTSVF+RIKP TT+  VFQR+S+A  +EENQCL    TR S  +RLS+STSKK RPSTS FDCLK+T+DQ +R++ +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F E N D+K+HS +PSHMKRK FV INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

A0A5A7V4E9 Retrotransposon gag protein2.1e-2857.58Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N  ++ SKEVD   + ++RTS+F+RIKP TTR SVFQR+S+A  +EENQC  S STR SA +RLS+STSKK RPSTSVF+ LK+T+DQ +R+  +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F E N D+K+HS +PSHMKR   V INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

A0A5D3BLW3 Retrotransposon gag protein1.6e-2861.48Show/hide
Query:  KEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLELKLFDEVNRD
        +EVDN  + +QRTSVF+RIKP TTR SVFQR+S+A  +E+NQC  ST TR SA +RLS+STSKK RPSTS FD +K+ +DQ +R+M +L+ K F E N D
Subjt:  KEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLELKLFDEVNRD

Query:  EKLHSSIPSHMKRKFFVLINTE
        +K+HS +PS MKRK FV INTE
Subjt:  EKLHSSIPSHMKRKFFVLINTE

A0A5D3DVW2 Retrotransposon gag protein2.1e-2857.58Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N  ++ SKEVD   + ++RTS+F+RIKP TTR SVFQR+S+A  +EENQC  S STR SA +RLS+STSKK RPSTSVF+ LK+T+DQ +R+  +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F E N D+K+HS +PSHMKR   V INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

A0A5D3DYN4 Retrotransposon gag protein5.5e-2959.85Show/hide
Query:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE
        +++N +   SKEV+N     QRTSVF+RIKP TTR SVFQR+S+A  +EENQC     TR SA +RLS+STSKK RPSTS FD LK+T+DQ +R+M +L+
Subjt:  QIENQHIAESKEVDNFKKGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLE

Query:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE
         K F + N D+K+HS IPSHMKRK FV INTE
Subjt:  LKLFDEVNRDEKLHSSIPSHMKRKFFVLINTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTCTACTGTCCATTGTTGCTTCAATGAACTTGCGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATGCTAATGACAA
GTTTCTTGTTAAGTATAACCATTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATAATGACTAAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAATCAGATTGAGAATCAACATATCGCTGAGTCAAAAGAAGTTGACAATTTCAAG
AAGGGTGAACAAAGGACTTCCGTCTTCAATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATCGCGGCGACAAAAGAAGAAAATCAATGTTT
GGTGTCCACCTCCACTCGACCTTCAGCTTCCCAAAGACTAAGTGTTTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACAGACGATC
AACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGGGACGAGAAGCTTCATAGTAGCATCCCGTCACATATGAAGAGGAAGTTTTTTGTT
CTCATAAATACGGAAGTGCCCCTGGCCGCCCCAGTTCCACTAGGTTCAGCCCTAGATTGCCTCCGGGCGCCTGGAAACCCTAGTGCAAGAACAGGCCACGTCTTCTCCCC
TCTTCAAATAAATTTACCGTTGGTGGCACGTGAAGGTCAGGACAAAGTAAGTGCGATGGATCATAATTTGTTTATGATACTTCGTATCTTGGATAAACCTGGTCTTATCA
CTAAAATCCATGATGAGAGGTTGATTAGGGATCCAATGAAGGGGAAGGAACTAATGAAGGACACTATAGGGTCAAATACAATATCAAAGGCAAAGAAGACTAACAGCATG
ACCAGAAAGATCATTGGGTTGAAGTTTGTAGGTCACACAATGTTGAGAAGCCTAGAATCAAGCACATACAAAGGACATGACCACACCGTTTCACTGCCAAGGGTCAGCCG
CACAACAAGAGCTTACCTACAGAACTTAATCAAGGAAAAACACAGAATGACCAAGACTTCGAGGCCAAGGCCAGGGCTGCCCAGGTCGAGGCTAGAGCAACCGAGGAAAA
ACAGAGGAAAGCTGGATTCTGCCCAGAAATGCGATCGCATTTCTGGGAAGGCAAATATGAAATGCGACCGCATTTCTGGAAAACCAGAGACCGTTCCGAGTCGCGCGCGA
GTCGTTGTTGACGAGTCTTCTTCGCACCTAACCGGCCGTTTTGACCCCGAAACTGACTGGGCAACTTCCAGCACCTATTTCGCAGCTCCTCAACGAATTTCTACACTATA
TAAGCTCGTGATTCGAAGGCAACCAGACAACCAGAGTCCTATTTTCGATCTTTATCGGAAATGGGTACATTTGGAGCAAGAATGTCTGTTTACTTTTGAAGACCAATATC
AAGATCAATATGCCCAACAAGAGATGCAACAGGAGATGGAACCACAAGTGTCAACCAACTTGGAAGAACTCATAAGAGAATATATGGTGAGAAATGATAAAGTCATGCAG
AACTTGGAGATTCAAGTAGGGCAATTGATAGAGGAATTGAAAAACAGTCAACAAGAAATCTTGCCTGACACCAAAGAGAATGTGGAACAAGAAGCACAAGAGCAATACAA
AGGGATGTCAGTTCAAAGTGGATTGGAGCATGAAGACCCTGAACTCTCAGTAGAAGCAAGAAGCATTCCAACACTTGAAAATACTGAGGAGACAAAAGAGAGAGAAGAGA
TTAAAGAAGAATCGCCTCAAAAAGAGAATAAAGAGGAGGCACCAGAAAAAGAAGTTGCAGTGAGCCATGCAGATGTCACTTCACAACAAGTGAACTTCGATGTGCTCCAG
GCATTAGAACACCCTGAGGAAATGAATGGATGTTTTGATTTTATTGATTCTTTTACTTGTTGTAGCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTTCTACTGTCCATTGTTGCTTCAATGAACTTGCGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATGCTAATGACAA
GTTTCTTGTTAAGTATAACCATTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATAATGACTAAGACAAAAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAATCAGATTGAGAATCAACATATCGCTGAGTCAAAAGAAGTTGACAATTTCAAG
AAGGGTGAACAAAGGACTTCCGTCTTCAATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATCGCGGCGACAAAAGAAGAAAATCAATGTTT
GGTGTCCACCTCCACTCGACCTTCAGCTTCCCAAAGACTAAGTGTTTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACAGACGATC
AACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGGGACGAGAAGCTTCATAGTAGCATCCCGTCACATATGAAGAGGAAGTTTTTTGTT
CTCATAAATACGGAAGTGCCCCTGGCCGCCCCAGTTCCACTAGGTTCAGCCCTAGATTGCCTCCGGGCGCCTGGAAACCCTAGTGCAAGAACAGGCCACGTCTTCTCCCC
TCTTCAAATAAATTTACCGTTGGTGGCACGTGAAGGTCAGGACAAAGTAAGTGCGATGGATCATAATTTGTTTATGATACTTCGTATCTTGGATAAACCTGGTCTTATCA
CTAAAATCCATGATGAGAGGTTGATTAGGGATCCAATGAAGGGGAAGGAACTAATGAAGGACACTATAGGGTCAAATACAATATCAAAGGCAAAGAAGACTAACAGCATG
ACCAGAAAGATCATTGGGTTGAAGTTTGTAGGTCACACAATGTTGAGAAGCCTAGAATCAAGCACATACAAAGGACATGACCACACCGTTTCACTGCCAAGGGTCAGCCG
CACAACAAGAGCTTACCTACAGAACTTAATCAAGGAAAAACACAGAATGACCAAGACTTCGAGGCCAAGGCCAGGGCTGCCCAGGTCGAGGCTAGAGCAACCGAGGAAAA
ACAGAGGAAAGCTGGATTCTGCCCAGAAATGCGATCGCATTTCTGGGAAGGCAAATATGAAATGCGACCGCATTTCTGGAAAACCAGAGACCGTTCCGAGTCGCGCGCGA
GTCGTTGTTGACGAGTCTTCTTCGCACCTAACCGGCCGTTTTGACCCCGAAACTGACTGGGCAACTTCCAGCACCTATTTCGCAGCTCCTCAACGAATTTCTACACTATA
TAAGCTCGTGATTCGAAGGCAACCAGACAACCAGAGTCCTATTTTCGATCTTTATCGGAAATGGGTACATTTGGAGCAAGAATGTCTGTTTACTTTTGAAGACCAATATC
AAGATCAATATGCCCAACAAGAGATGCAACAGGAGATGGAACCACAAGTGTCAACCAACTTGGAAGAACTCATAAGAGAATATATGGTGAGAAATGATAAAGTCATGCAG
AACTTGGAGATTCAAGTAGGGCAATTGATAGAGGAATTGAAAAACAGTCAACAAGAAATCTTGCCTGACACCAAAGAGAATGTGGAACAAGAAGCACAAGAGCAATACAA
AGGGATGTCAGTTCAAAGTGGATTGGAGCATGAAGACCCTGAACTCTCAGTAGAAGCAAGAAGCATTCCAACACTTGAAAATACTGAGGAGACAAAAGAGAGAGAAGAGA
TTAAAGAAGAATCGCCTCAAAAAGAGAATAAAGAGGAGGCACCAGAAAAAGAAGTTGCAGTGAGCCATGCAGATGTCACTTCACAACAAGTGAACTTCGATGTGCTCCAG
GCATTAGAACACCCTGAGGAAATGAATGGATGTTTTGATTTTATTGATTCTTTTACTTGTTGTAGCTTGTAG
Protein sequenceShow/hide protein sequence
MRSTVHCCFNELALQEDKASIVAGQETTLQGAYANDKFLVKYNHLFEPDSDVVTVIMTKTKTMEERMAEMQEHINTLMKAIEERDSQIEHLKNQIENQHIAESKEVDNFK
KGEQRTSVFNRIKPPTTRPSVFQRMSIAATKEENQCLVSTSTRPSASQRLSVSTSKKSRPSTSVFDCLKVTDDQPKRKMDNLELKLFDEVNRDEKLHSSIPSHMKRKFFV
LINTEVPLAAPVPLGSALDCLRAPGNPSARTGHVFSPLQINLPLVAREGQDKVSAMDHNLFMILRILDKPGLITKIHDERLIRDPMKGKELMKDTIGSNTISKAKKTNSM
TRKIIGLKFVGHTMLRSLESSTYKGHDHTVSLPRVSRTTRAYLQNLIKEKHRMTKTSRPRPGLPRSRLEQPRKNRGKLDSAQKCDRISGKANMKCDRISGKPETVPSRAR
VVVDESSSHLTGRFDPETDWATSSTYFAAPQRISTLYKLVIRRQPDNQSPIFDLYRKWVHLEQECLFTFEDQYQDQYAQQEMQQEMEPQVSTNLEELIREYMVRNDKVMQ
NLEIQVGQLIEELKNSQQEILPDTKENVEQEAQEQYKGMSVQSGLEHEDPELSVEARSIPTLENTEETKEREEIKEESPQKENKEEAPEKEVAVSHADVTSQQVNFDVLQ
ALEHPEEMNGCFDFIDSFTCCSL