; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019341 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019341
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:49964948..49972089
RNA-Seq ExpressionSpg019341
SyntenySpg019341
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026300.1 uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa]6.2e-2330.15Show/hide
Query:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------
        FGT +P+VV+F +E  +K SQEK  SIE+++EGWT+    +          K++  P R L++ +                  E   IV           
Subjt:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------

Query:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC
        +C +    E+           + VP      N + NL+  +   K   +     +  KGE S S  K  ++  EK S+ P+LRYVPLSRRKKGES F E 
Subjt:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC

Query:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG
        P+                                                                             SI+KKLL+EG+ +P+++KGLG
Subjt:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG

Query:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
        YKSPE +RITRKGK KV D N+ITVEEVD   EKE
Subjt:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]5.8e-2145.27Show/hide
Query:  VPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK-------------KKLLK
        VP      N + NL+  + A K   + +     +KGE S S  K  ++ DEK S+  +LRYVPLSRR+KGES F + P+ +K             KKLL+
Subjt:  VPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK-------------KKLLK

Query:  EGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
        EG+ +P+++KG GYKSPEP+ I RK K KV D NHITV EVD   EKE
Subjt:  EGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]4.4e-2139.89Show/hide
Query:  NDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK--------------------------
        N + NL+  + A K   + +      K E S +  K  ++ DEK S+ P+LRYVPLSRRKKGES F E P+ +K                          
Subjt:  NDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK--------------------------

Query:  -----------------KKLLKEGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKESIDNSPKGSYLRL
                         KKLL+EG+ +P+++KGLGYKSPEP+RITRKGK KV D NHITV+EVD   EKE  DN    ++ R+
Subjt:  -----------------KKLLKEGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKESIDNSPKGSYLRL

TYK16284.1 uncharacterized protein E5676_scaffold21G00550 [Cucumis melo var. makuwa]1.6e-2328.95Show/hide
Query:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRKKQKQKYFPRRFLDDSQGEALGIVTCHIMDVVEDDDVPASS------SKTNDKLNLE---
        FG  +PVVV+F +E   + SQEK  SIE+++EGW +V RRKK       R+F  D + E  G+V CH ++  E++ +P  S      SK   + N++   
Subjt:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRKKQKQKYFPRRFLDDSQGEALGIVTCHIMDVVEDDDVPASS------SKTNDKLNLE---

Query:  ----------------------------------------------------------------PPADARKGAIE-----------DVKASDLKKGETSI
                                                                        P ++A     +           +V   ++  GE S 
Subjt:  ----------------------------------------------------------------PPADARKGAIE-----------DVKASDLKKGETSI

Query:  SLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIKK---KLLKEGYSLPITK-----------------------------------------
        S  K  ++ DEK S+ P+LRY+PLS  KKGES F E P+ +K    K+LKE ++  +TK                                         
Subjt:  SLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIKK---KLLKEGYSLPITK-----------------------------------------

Query:  ---KGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
           KGLGY+ PEP+RI RKGK KV D NHIT+EEVD   EKE
Subjt:  ---KGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]6.2e-2330.15Show/hide
Query:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------
        FGT +P+VV+F +E  +K SQEK  SIE+++EGWT+    +          K++  P R L++ +                  E   IV           
Subjt:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------

Query:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC
        +C +    E+           + VP      N + NL+  +   K   +     +  KGE S S  K  ++  EK S+ P+LRYVPLSRRKKGES F E 
Subjt:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC

Query:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG
        P+                                                                             SI+KKLL+EG+ +P+++KGLG
Subjt:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG

Query:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
        YKSPE +RITRKGK KV D N+ITVEEVD   EKE
Subjt:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

TrEMBL top hitse value%identityAlignment
A0A5A7SJC0 Ribonuclease H3.0e-2330.15Show/hide
Query:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------
        FGT +P+VV+F +E  +K SQEK  SIE+++EGWT+    +          K++  P R L++ +                  E   IV           
Subjt:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------

Query:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC
        +C +    E+           + VP      N + NL+  +   K   +     +  KGE S S  K  ++  EK S+ P+LRYVPLSRRKKGES F E 
Subjt:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC

Query:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG
        P+                                                                             SI+KKLL+EG+ +P+++KGLG
Subjt:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG

Query:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
        YKSPE +RITRKGK KV D N+ITVEEVD   EKE
Subjt:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

A0A5A7TPR5 RNase H domain-containing protein2.8e-2145.27Show/hide
Query:  VPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK-------------KKLLK
        VP      N + NL+  + A K   + +     +KGE S S  K  ++ DEK S+  +LRYVPLSRR+KGES F + P+ +K             KKLL+
Subjt:  VPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK-------------KKLLK

Query:  EGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
        EG+ +P+++KG GYKSPEP+ I RK K KV D NHITV EVD   EKE
Subjt:  EGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

A0A5A7UMY2 Reverse transcriptase domain-containing protein2.1e-2139.89Show/hide
Query:  NDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK--------------------------
        N + NL+  + A K   + +      K E S +  K  ++ DEK S+ P+LRYVPLSRRKKGES F E P+ +K                          
Subjt:  NDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIK--------------------------

Query:  -----------------KKLLKEGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKESIDNSPKGSYLRL
                         KKLL+EG+ +P+++KGLGYKSPEP+RITRKGK KV D NHITV+EVD   EKE  DN    ++ R+
Subjt:  -----------------KKLLKEGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKESIDNSPKGSYLRL

A0A5D3CZ99 Reverse transcriptase domain-containing protein7.9e-2428.95Show/hide
Query:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRKKQKQKYFPRRFLDDSQGEALGIVTCHIMDVVEDDDVPASS------SKTNDKLNLE---
        FG  +PVVV+F +E   + SQEK  SIE+++EGW +V RRKK       R+F  D + E  G+V CH ++  E++ +P  S      SK   + N++   
Subjt:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRKKQKQKYFPRRFLDDSQGEALGIVTCHIMDVVEDDDVPASS------SKTNDKLNLE---

Query:  ----------------------------------------------------------------PPADARKGAIE-----------DVKASDLKKGETSI
                                                                        P ++A     +           +V   ++  GE S 
Subjt:  ----------------------------------------------------------------PPADARKGAIE-----------DVKASDLKKGETSI

Query:  SLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIKK---KLLKEGYSLPITK-----------------------------------------
        S  K  ++ DEK S+ P+LRY+PLS  KKGES F E P+ +K    K+LKE ++  +TK                                         
Subjt:  SLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIKK---KLLKEGYSLPITK-----------------------------------------

Query:  ---KGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
           KGLGY+ PEP+RI RKGK KV D NHIT+EEVD   EKE
Subjt:  ---KGLGYKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

A0A5D3DD54 Ribonuclease H3.0e-2330.15Show/hide
Query:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------
        FGT +P+VV+F +E  +K SQEK  SIE+++EGWT+    +          K++  P R L++ +                  E   IV           
Subjt:  FGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRK--------KQKQKYFPRRFLDDSQ-----------------GEALGIV-----------

Query:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC
        +C +    E+           + VP      N + NL+  +   K   +     +  KGE S S  K  ++  EK S+ P+LRYVPLSRRKKGES F E 
Subjt:  TCHIMDVVED-----------DDVPASSSKTNDKLNLEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTEC

Query:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG
        P+                                                                             SI+KKLL+EG+ +P+++KGLG
Subjt:  PK-----------------------------------------------------------------------------SIKKKLLKEGYSLPITKKGLG

Query:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE
        YKSPE +RITRKGK KV D N+ITVEEVD   EKE
Subjt:  YKSPEPVRITRKGKAKVADINHITVEEVDDSREKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATA
TTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGGAGAAATTTACAGCGATCACAAGAAAAGGAGGCTGCTG
CGTTTTCGTTCGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTTTGTAACGGTCCAATCGATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAG
GAAGCTCCAGCGAAGGTTACAACATCGAGCGACTCTTATACGGGTCCTGTCACTCGTAGTCGTTCCCAAGGAATAGATATCAAGAAGGATCACACTCCTCTCGCTGTTGC
AAGTAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGACAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCATTCCAACATCTAAGCAACCAAAGAATACAC
TAAATCCTTATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGAAGAAAGAATGACAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGAT
CTTGAGATTGCCTATTTGAAGAACCAGATATGGGCAATTGGATTAAAAGCCAAACGGACTATGGGTAAAAGCTTATTCTTACCGAACGAGATTAAACACGCTAGAACAGG
TCCAAAAGGTATCGCTAAAACTTACAAATTGAAGCCACACGATAACAAAACGCACTTGAGGTTCACACGAGGGAAGCCGATGCTACTGACTGAGGCTGGTGTCGAGGTCC
TGCCGCTCGTGGGTTGCTACAGACACCAAATGGTGCTGGAAGCCATGGCTTGCAGGTCTTCGCACGCAGAGGGGAGAACGAGAGGTCGAGAGAGGGAGATGGAGAGAGAG
TTTGCCGATGAAGAGAAATCAGGGGAAGACGACGTTGGCGCGAGAGACGAACTTCACGGGTCTTTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCAAAAAGAAGCCAC
AATGAAGGGATCCCAAGAAAAATATGATTCCATTGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAAATACTTCCCAAGACGCTTTC
TCGATGATAGTCAAGGAGAAGCACTTGGAATCGTCACGTGTCACATTATGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCAAAAACGAATGATAAGCTCAAT
TTAGAGCCACCAGCTGATGCAAGAAAGGGAGCTATTGAAGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTATAAGCCTTGTGAAACCCAAGGTTGTAAAGGA
TGAGAAATGTTCAGATTCACCTGTCCTACGATACGTCCCTTTATCTCGACGTAAGAAGGGTGAATCACATTTCACTGAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAA
AAGAAGGTTATAGTCTGCCTATAACAAAAAAAGGACTTGGATATAAGTCGCCCGAGCCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATA
ACAGTAGAGGAGGTTGATGACTCAAGAGAAAAAGAGAGCATTGATAACTCTCCAAAAGGTAGTTATTTACGCCTCATTTCTATAGGGATTTGTGTGTCTTTTGTGCTTAA
TAGGGTTGCTTTTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATA
TTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGGAGAAATTTACAGCGATCACAAGAAAAGGAGGCTGCTG
CGTTTTCGTTCGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTTTGTAACGGTCCAATCGATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAG
GAAGCTCCAGCGAAGGTTACAACATCGAGCGACTCTTATACGGGTCCTGTCACTCGTAGTCGTTCCCAAGGAATAGATATCAAGAAGGATCACACTCCTCTCGCTGTTGC
AAGTAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGACAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCATTCCAACATCTAAGCAACCAAAGAATACAC
TAAATCCTTATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGAAGAAAGAATGACAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGAT
CTTGAGATTGCCTATTTGAAGAACCAGATATGGGCAATTGGATTAAAAGCCAAACGGACTATGGGTAAAAGCTTATTCTTACCGAACGAGATTAAACACGCTAGAACAGG
TCCAAAAGGTATCGCTAAAACTTACAAATTGAAGCCACACGATAACAAAACGCACTTGAGGTTCACACGAGGGAAGCCGATGCTACTGACTGAGGCTGGTGTCGAGGTCC
TGCCGCTCGTGGGTTGCTACAGACACCAAATGGTGCTGGAAGCCATGGCTTGCAGGTCTTCGCACGCAGAGGGGAGAACGAGAGGTCGAGAGAGGGAGATGGAGAGAGAG
TTTGCCGATGAAGAGAAATCAGGGGAAGACGACGTTGGCGCGAGAGACGAACTTCACGGGTCTTTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCAAAAAGAAGCCAC
AATGAAGGGATCCCAAGAAAAATATGATTCCATTGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAAATACTTCCCAAGACGCTTTC
TCGATGATAGTCAAGGAGAAGCACTTGGAATCGTCACGTGTCACATTATGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCAAAAACGAATGATAAGCTCAAT
TTAGAGCCACCAGCTGATGCAAGAAAGGGAGCTATTGAAGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTATAAGCCTTGTGAAACCCAAGGTTGTAAAGGA
TGAGAAATGTTCAGATTCACCTGTCCTACGATACGTCCCTTTATCTCGACGTAAGAAGGGTGAATCACATTTCACTGAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAA
AAGAAGGTTATAGTCTGCCTATAACAAAAAAAGGACTTGGATATAAGTCGCCCGAGCCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATA
ACAGTAGAGGAGGTTGATGACTCAAGAGAAAAAGAGAGCATTGATAACTCTCCAAAAGGTAGTTATTTACGCCTCATTTCTATAGGGATTTGTGTGTCTTTTGTGCTTAA
TAGGGTTGCTTTTAGATGA
Protein sequenceShow/hide protein sequence
MGSWEHNRTRWNSLLPDFREADESGVTDTREGLTSRYWSISVDTENMSAVRRVQLSIRSHWRNLQRSQEKEAAAFSFVERRWRRTVKSTTKVCNGPIDALPLRGDFYSLQ
EAPAKVTTSSDSYTGPVTRSRSQGIDIKKDHTPLAVASRISKLIEESSKDKVAVKDNPLFESIIPTSKQPKNTLNPYVMSVMMADVDQEERMTEMERKLNLLMKAVDERD
LEIAYLKNQIWAIGLKAKRTMGKSLFLPNEIKHARTGPKGIAKTYKLKPHDNKTHLRFTRGKPMLLTEAGVEVLPLVGCYRHQMVLEAMACRSSHAEGRTRGREREMERE
FADEEKSGEDDVGARDELHGSFGTLDPVVVRFQKEATMKGSQEKYDSIEDENEGWTLVVRRKKQKQKYFPRRFLDDSQGEALGIVTCHIMDVVEDDDVPASSSKTNDKLN
LEPPADARKGAIEDVKASDLKKGETSISLVKPKVVKDEKCSDSPVLRYVPLSRRKKGESHFTECPKSIKKKLLKEGYSLPITKKGLGYKSPEPVRITRKGKAKVADINHI
TVEEVDDSREKESIDNSPKGSYLRLISIGICVSFVLNRVAFR