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Spg019376 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019376
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:41986603..41991981
RNA-Seq ExpressionSpg019376
SyntenySpg019376
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]2.4e-0776.32Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        Y+ LLTL+VLRDNDA+VSAG+ PLRQR+WEC A PTTS
Subjt:  YIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0857.35Show/hide
Query:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        E+R    +N  +P  +R+ L       T  + PL TLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]2.7e-0658.93Show/hide
Query:  PSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        PSL    L++T+         L TLSVLR+NDA VSAG+ PLRQRRWEC  GPTTS
Subjt:  PSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0857.35Show/hide
Query:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        E+R    +N  +P  +R+ L       T  + PL TLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]1.0e-0580Show/hide
Query:  LLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        L TLSVLR+NDA VSAG+ PLRQRRWEC  GPTTS
Subjt:  LLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.2e-0776.32Show/hide
Query:  YIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        Y+ LLTL+VLRDNDA+VSAG+ PLRQR+WEC A PTTS
Subjt:  YIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
A0A5A7T7M6 Reverse transcriptase1.4e-0857.35Show/hide
Query:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        E+R    +N  +P  +R+ L       T  + PL TLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
A0A5A7TDY3 Uncharacterized protein1.3e-0658.93Show/hide
Query:  PSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        PSL    L++T+         L TLSVLR+NDA VSAG+ PLRQRRWEC  GPTTS
Subjt:  PSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
A0A5D3BTP3 Reverse transcriptase1.4e-0857.35Show/hide
Query:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        E+R    +N  +P  +R+ L       T  + PL TLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  EMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
A0A5D3DUS7 Uncharacterized protein4.9e-0680Show/hide
Query:  LLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
        L TLSVLR+NDA VSAG+ PLRQRRWEC  GPTTS
Subjt:  LLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGACTCTGTTGTGCGATTCCGCAAGCGTACGATTGCCACAAAAAAAGCAGAGGAAGCTGGAAACTGCCCAGAAATGCGACCACATTTCTTGGAAGGAAAAAATGA
AATGCGACCGCATTTCTGGAAAAACAGCGCAGTTCCGAGTCTGTCGCGGGTCGTTTTGAACGAGACTATTGCGCACCTAACCGGCTGTTATATTCCGTTGTTGACGTTGA
GTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGGAGTGTTTGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGACTCTGTTGTGCGATTCCGCAAGCGTACGATTGCCACAAAAAAAGCAGAGGAAGCTGGAAACTGCCCAGAAATGCGACCACATTTCTTGGAAGGAAAAAATGA
AATGCGACCGCATTTCTGGAAAAACAGCGCAGTTCCGAGTCTGTCGCGGGTCGTTTTGAACGAGACTATTGCGCACCTAACCGGCTGTTATATTCCGTTGTTGACGTTGA
GTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGGAGTGTTTGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MWDSVVRFRKRTIATKKAEEAGNCPEMRPHFLEGKNEMRPHFWKNSAVPSLSRVVLNETIAHLTGCYIPLLTLSVLRDNDAVVSAGQAPLRQRRWECLAGPTTS