; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019385 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019385
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:48658731..48660667
RNA-Seq ExpressionSpg019385
SyntenySpg019385
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.7e-1645.52Show/hide
Query:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI
        +STGFSSK GG LV SD LSIL              G + RI         W                            PRGNR +LQT E+DKT    
Subjt:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS
                 PLSTLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.2e-1064.06Show/hide
Query:  RGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS
        RGNR +LQT ELDKT              LSTLSVLR+NDA VSAG+ PLRQRRWEC  GPTTS
Subjt:  RGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.0e-1350.86Show/hide
Query:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP
        RS  ST FSSK G  LV SD LSIL  +   +    +WPRGNRS+LQT ELDKT              LSTLSVLRDNDAVVSAG            +AP
Subjt:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP

Query:  LRQR---RWECWAGPT
        L +R   RW  WA PT
Subjt:  LRQR---RWECWAGPT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.0e-1350.86Show/hide
Query:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP
        RS  ST FSSK G  LV SD LSIL  +   +    +WPRGNRS+LQT ELDKT              LSTLSVLRDNDAVVSAG            +AP
Subjt:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP

Query:  LRQR---RWECWAGPT
        L +R   RW  WA PT
Subjt:  LRQR---RWECWAGPT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]9.7e-1645.52Show/hide
Query:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI
        +STGFSSK GG LV SD LSIL              G + RI         W                            PRGNR +LQT E+DKT    
Subjt:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS
                 PLSTLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.7e-1645.52Show/hide
Query:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI
        +STGFSSK GG LV SD LSIL              G + RI         W                            PRGNR +LQT E+DKT    
Subjt:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS
                 PLSTLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein6.0e-1164.06Show/hide
Query:  RGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS
        RGNR +LQT ELDKT              LSTLSVLR+NDA VSAG+ PLRQRRWEC  GPTTS
Subjt:  RGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS

A0A5A7VGQ5 Uncharacterized protein9.8e-1450.86Show/hide
Query:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP
        RS  ST FSSK G  LV SD LSIL  +   +    +WPRGNRS+LQT ELDKT              LSTLSVLRDNDAVVSAG            +AP
Subjt:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP

Query:  LRQR---RWECWAGPT
        L +R   RW  WA PT
Subjt:  LRQR---RWECWAGPT

A0A5D3BG85 Uncharacterized protein9.8e-1450.86Show/hide
Query:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP
        RS  ST FSSK G  LV SD LSIL  +   +    +WPRGNRS+LQT ELDKT              LSTLSVLRDNDAVVSAG            +AP
Subjt:  RSQESTGFSSKAGGPLVLSDVLSILGCKSRIRS--SIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------QAP

Query:  LRQR---RWECWAGPT
        L +R   RW  WA PT
Subjt:  LRQR---RWECWAGPT

A0A5D3BTP3 Reverse transcriptase4.7e-1645.52Show/hide
Query:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI
        +STGFSSK GG LV SD LSIL              G + RI         W                            PRGNR +LQT E+DKT    
Subjt:  ESTGFSSKAGGPLVLSDVLSIL--------------GCKSRI-----RSSIW----------------------------PRGNRSTLQTRELDKTPEAI

Query:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS
                 PLSTLSVL DNDAVVSAGQAPLRQRRWEC  GPTTS
Subjt:  WYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGTCGGTTTGAGCTACACAGAAGGAGTCAAGAGAGCACAGGATTTTCAAGCAAAGCAGGAGGACCTCT
GGTTCTCTCTGATGTTTTGAGCATTCTGGGGTGTAAAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGACTCTACAAACCAGGGAACTAGATAAGACAC
CCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAA
AGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGTCGGTTTGAGCTACACAGAAGGAGTCAAGAGAGCACAGGATTTTCAAGCAAAGCAGGAGGACCTCT
GGTTCTCTCTGATGTTTTGAGCATTCTGGGGTGTAAAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGACTCTACAAACCAGGGAACTAGATAAGACAC
CCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAA
AGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MSAVRRVQLSIRSHCRFELHRRSQESTGFSSKAGGPLVLSDVLSILGCKSRIRSSIWPRGNRSTLQTRELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGQAPLRQ
RRWECWAGPTTS