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Spg019393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold1:45374385..45378130
RNA-Seq ExpressionSpg019393
SyntenySpg019393
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]1.3e-1250.48Show/hide
Query:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASSAS
        PSSS+ SA   P   +  QY            +KY+FQ+AT+  +KEWF  NGYLQDID  +N +FLN+KSKLLA LAQ T+DADFQR+L   + AS++S
Subjt:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASSAS

Query:  PASSS
         ++SS
Subjt:  PASSS

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]9.1e-1965.48Show/hide
Query:  VTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASS
        + K LKIK W+KYNFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A    +SS SP+SS
Subjt:  VTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]4.7e-3166.39Show/hide
Query:  PPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K    ++ PQYK + K LKIKWW KYNFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]6.8e-1447.92Show/hide
Query:  MESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK
        MESST PPRPS NL+ P G V+Q+R   SPSS   SS    +TYS AVTP+K   P+ +  +   K I  +D           ++  +  NG LQDID +
Subjt:  MESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK

Query:  RNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASS
        +NA+FLNDK K LAAL Q T DADFQR+L  A   +SS+ PA S
Subjt:  RNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASS

TYK19576.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.1e-1136.15Show/hide
Query:  ESSTPPPRPSANLVRPSGGVVQLRPPVSP--SSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK
        +SS+ PP PS  L+RPSG     +   SP  SS   +   + S+YS  V P+      +K ++K L+IKWW+K+N+ N  +NK+K+WF AN +LQD+  +
Subjt:  ESSTPPPRPSANLVRPSGGVVQLRPPVSP--SSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK

Query:  RNAEFLNDKSKLLAALAQTTSDADFQRILQ
         +  FL  K+ +++ LA  ++  +F+   Q
Subjt:  RNAEFLNDKSKLLAALAQTTSDADFQRILQ

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein6.2e-1350.48Show/hide
Query:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASSAS
        PSSS+ SA   P   +  QY            +KY+FQ+AT+  +KEWF  NGYLQDID  +N +FLN+KSKLLA LAQ T+DADFQR+L   + AS++S
Subjt:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASSAS

Query:  PASSS
         ++SS
Subjt:  PASSS

A0A5A7SWC0 Uncharacterized protein4.4e-1965.48Show/hide
Query:  VTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASS
        + K LKIK W+KYNFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A    +SS SP+SS
Subjt:  VTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASS

A0A5A7UZX0 Polyprotein2.3e-3166.39Show/hide
Query:  PPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K    ++ PQYK + K LKIKWW KYNFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

A0A5D3BI61 Uncharacterized protein3.3e-1447.92Show/hide
Query:  MESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK
        MESST PPRPS NL+ P G V+Q+R   SPSS   SS    +TYS AVTP+K   P+ +  +   K I  +D           ++  +  NG LQDID +
Subjt:  MESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK

Query:  RNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASS
        +NA+FLNDK K LAAL Q T DADFQR+L  A   +SS+ PA S
Subjt:  RNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASS

A0A5D3D7N3 Retrotransposable element Tf21.5e-1136.15Show/hide
Query:  ESSTPPPRPSANLVRPSGGVVQLRPPVSP--SSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK
        +SS+ PP PS  L+RPSG     +   SP  SS   +   + S+YS  V P+      +K ++K L+IKWW+K+N+ N  +NK+K+WF AN +LQD+  +
Subjt:  ESSTPPPRPSANLVRPSGGVVQLRPPVSP--SSVVGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIK

Query:  RNAEFLNDKSKLLAALAQTTSDADFQRILQ
         +  FL  K+ +++ LA  ++  +F+   Q
Subjt:  RNAEFLNDKSKLLAALAQTTSDADFQRILQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCCATATGCTGGTCCTCTATTTCATTTTGAGTTAGCTCCTTTGAGGGAGCTGGTTTTGAGGGAAAGGCAGAACCTCCTCTTCAAGGGGCAGTCGCCCATCTTCTT
CCTCCTCTGCACCTCCTCCCATGAGTGTAGATCAATATGCTATGGAATTAGGGTTTACTCCGGTAACCCGTTCCAGATCAAGGCAAGGCGGTATACGCCCTATGCGGCAA
TGGAGTCTTCTACTCCACCTCCGCGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAGTCGTTCAACTGAGACCTCCTGTCTCTCCCTCTTCAGTTGTGGGATCATCA
ATCCCATCTTCTTCAACCTACTCTGCGGCGGTAACACCGGAAAAAAGCAATCAACCACAATACAAAACAGTCACCAAGATCCTAAAGATCAAATGGTGGGACAAATACAA
TTTTCAGAATGCAACCCTCAACAAGGTTAAAGAGTGGTTTGCGGCCAATGGATATCTTCAGGATATCGACATCAAGAGAAATGCAGAATTTCTCAACGACAAATCAAAGC
TCCTTGCAGCTCTTGCTCAGACCACATCTGACGCGGACTTCCAAAGAATTCTCCAGATGGCAGCCTCAAGCGCATCTCCAGCTTCTTCGAGCAGAAGAAGAAGACGAAGA
TCCGGATTACGATCTGGACGACCCGTTCCTCGACTCACAACCCATGTGAGCTCCGAGTCAAATAATCCTGTTTCACATAGAAGCAGTCAGCATTTCAGGAATACTTCAAA
AGGAAATCGTGAGGACCTAGTTTGGCGTCTACCGGCAGATGATGATCTGATGGTCAAATTTGGCCGGGTAGAACTCACCTCACCTTCACGTGCCACCAACGGTAAATTTG
TTTGTGAGGGGGGAAGACGTGGCCTGCAAGACAGTAAACTGCACACTGGTGTGGTGCTTGCCACACCGGCTCTGATGCTTAAGTCAGCAAGCAGAACGATAGGAAACAAG
AAAGTAAGAGCAAGAGGAGAGTCAGAGAATAGAGTTCGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCCATATGCTGGTCCTCTATTTCATTTTGAGTTAGCTCCTTTGAGGGAGCTGGTTTTGAGGGAAAGGCAGAACCTCCTCTTCAAGGGGCAGTCGCCCATCTTCTT
CCTCCTCTGCACCTCCTCCCATGAGTGTAGATCAATATGCTATGGAATTAGGGTTTACTCCGGTAACCCGTTCCAGATCAAGGCAAGGCGGTATACGCCCTATGCGGCAA
TGGAGTCTTCTACTCCACCTCCGCGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAGTCGTTCAACTGAGACCTCCTGTCTCTCCCTCTTCAGTTGTGGGATCATCA
ATCCCATCTTCTTCAACCTACTCTGCGGCGGTAACACCGGAAAAAAGCAATCAACCACAATACAAAACAGTCACCAAGATCCTAAAGATCAAATGGTGGGACAAATACAA
TTTTCAGAATGCAACCCTCAACAAGGTTAAAGAGTGGTTTGCGGCCAATGGATATCTTCAGGATATCGACATCAAGAGAAATGCAGAATTTCTCAACGACAAATCAAAGC
TCCTTGCAGCTCTTGCTCAGACCACATCTGACGCGGACTTCCAAAGAATTCTCCAGATGGCAGCCTCAAGCGCATCTCCAGCTTCTTCGAGCAGAAGAAGAAGACGAAGA
TCCGGATTACGATCTGGACGACCCGTTCCTCGACTCACAACCCATGTGAGCTCCGAGTCAAATAATCCTGTTTCACATAGAAGCAGTCAGCATTTCAGGAATACTTCAAA
AGGAAATCGTGAGGACCTAGTTTGGCGTCTACCGGCAGATGATGATCTGATGGTCAAATTTGGCCGGGTAGAACTCACCTCACCTTCACGTGCCACCAACGGTAAATTTG
TTTGTGAGGGGGGAAGACGTGGCCTGCAAGACAGTAAACTGCACACTGGTGTGGTGCTTGCCACACCGGCTCTGATGCTTAAGTCAGCAAGCAGAACGATAGGAAACAAG
AAAGTAAGAGCAAGAGGAGAGTCAGAGAATAGAGTTCGAGATTAG
Protein sequenceShow/hide protein sequence
MRPYAGPLFHFELAPLRELVLRERQNLLFKGQSPIFFLLCTSSHECRSICYGIRVYSGNPFQIKARRYTPYAAMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVVGSS
IPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKYNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASSASPASSSRRRRRR
SGLRSGRPVPRLTTHVSSESNNPVSHRSSQHFRNTSKGNREDLVWRLPADDDLMVKFGRVELTSPSRATNGKFVCEGGRRGLQDSKLHTGVVLATPALMLKSASRTIGNK
KVRARGESENRVRD