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Spg019433 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019433
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:40470623..40473103
RNA-Seq ExpressionSpg019433
SyntenySpg019433
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-2857.45Show/hide
Query:  GSEINLLTSGFLFGLSYTKGIRRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESVTFQ--------
        G+ +NL     LFGL Y +G +RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAE S S+SSTWLEL  E V  +        
Subjt:  GSEINLLTSGFLFGLSYTKGIRRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESVTFQ--------

Query:  ------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  ------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.2e-2854.61Show/hide
Query:  KAHAKPAIAGSEINLLTSGFLFGLSYTKGIR----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAECSISSSSTWLELYI
        K +AKPAIA S  N      LFGLSY + +R                       PRGNR +L TG+LDKTVEIELPVPDTLPTSAE S S+SSTWLELY 
Subjt:  KAHAKPAIAGSEINLLTSGFLFGLSYTKGIR----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAECSISSSSTWLELYI

Query:  ESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK AG PGG
Subjt:  ESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]8.1e-2562.93Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC
        PRGNR SLQT ELDKT               V IELPVPD LPTSAE S S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGG
        WLHAVFRAK  GGPGG
Subjt:  WLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2460.68Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAE S S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGG
        CWLHAVFRAK  GGPGG
Subjt:  CWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.9e-2664.66Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAE S S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGG
        WLHAVFRAK  GGPGG
Subjt:  WLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.6e-2957.45Show/hide
Query:  GSEINLLTSGFLFGLSYTKGIRRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESVTFQ--------
        G+ +NL     LFGL Y +G +RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAE S S+SSTWLEL  E V  +        
Subjt:  GSEINLLTSGFLFGLSYTKGIRRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESVTFQ--------

Query:  ------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  ------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein5.9e-2954.61Show/hide
Query:  KAHAKPAIAGSEINLLTSGFLFGLSYTKGIR----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAECSISSSSTWLELYI
        K +AKPAIA S  N      LFGLSY + +R                       PRGNR +L TG+LDKTVEIELPVPDTLPTSAE S S+SSTWLELY 
Subjt:  KAHAKPAIAGSEINLLTSGFLFGLSYTKGIR----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAECSISSSSTWLELYI

Query:  ESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK AG PGG
Subjt:  ESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UT17 CCHC-type domain-containing protein3.9e-2562.93Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC
        PRGNR SLQT ELDKT               V IELPVPD LPTSAE S S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGG
        WLHAVFRAK  GGPGG
Subjt:  WLHAVFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase8.8e-2560.68Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAE S S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAECSISSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGG
        CWLHAVFRAK  GGPGG
Subjt:  CWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein9.4e-2764.66Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAE S S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAECSISSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGG
        WLHAVFRAK  GGPGG
Subjt:  WLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGGAACTGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCCCAAAAATGCGGTCGCATTTCTGGGGAAAAGCTCATGCAAAGCCAGCCATTGC
AGGATCTGAGATCAACCTGTTAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAAAAGGAATCAGGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAG
ATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAATGTTCTATATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACT
TTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGG
G
mRNA sequenceShow/hide mRNA sequence
ATGACTCGGAACTGCCTCTGTTTTTCCAGAAATGCGGTCGCATTTCATTTTGCCTTCCCAAAAATGCGGTCGCATTTCTGGGGAAAAGCTCATGCAAAGCCAGCCATTGC
AGGATCTGAGATCAACCTGTTAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAAAAGGAATCAGGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAG
ATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAATGTTCTATATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACT
TTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGG
G
Protein sequenceShow/hide protein sequence
MTRNCLCFSRNAVAFHFAFPKMRSHFWGKAHAKPAIAGSEINLLTSGFLFGLSYTKGIRRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAECSISSSSTWLELYIESVT
FQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG