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Spg019442 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019442
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold1:41298721..41301039
RNA-Seq ExpressionSpg019442
SyntenySpg019442
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-2460.48Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV
        PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    F+VS+GST IV
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV

Query:  RGDDVCCLHAVFRAKLAGGPGGGV
        RGD+VC LHAVF AK AGGPGGGV
Subjt:  RGDDVCCLHAVFRAKLAGGPGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2458.46Show/hide
Query:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST
        D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    FSV +GST
Subjt:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST

Query:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI
        GIVRGDDVC LHAVFRAK  GGPGGGVT +
Subjt:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-2965.81Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKL
        PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVCCLH VFRAK 
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKL

Query:  AGGPGGGVTAILAFVKG
        AGGPGGGVT +   + G
Subjt:  AGGPGGGVTAILAFVKG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]6.8e-2460.8Show/hide
Query:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV
        L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SS                 F NQVMS LH V    F+VS+GSTGIV
Subjt:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV

Query:  RGDDVCCLHAVFRAKLAGGPGGGVT
        RGDDVC LHAVFRAK  GGPGGGVT
Subjt:  RGDDVCCLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.8e-2458.46Show/hide
Query:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST
        D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    FSV +GST
Subjt:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST

Query:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI
        GIVRGDDVC LHAVFRAK  GGPGGGVT +
Subjt:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.3e-2460.48Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV
        PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    F+VS+GST IV
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV

Query:  RGDDVCCLHAVFRAKLAGGPGGGV
        RGD+VC LHAVF AK AGGPGGGV
Subjt:  RGDDVCCLHAVFRAKLAGGPGGGV

A0A5A7V9N3 Reverse transcriptase8.6e-2558.46Show/hide
Query:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST
        D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    FSV +GST
Subjt:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST

Query:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI
        GIVRGDDVC LHAVFRAK  GGPGGGVT +
Subjt:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein2.6e-2965.81Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKL
        PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVCCLH VFRAK 
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKL

Query:  AGGPGGGVTAILAFVKG
        AGGPGGGVT +   + G
Subjt:  AGGPGGGVTAILAFVKG

A0A5D3CJX3 CCHC-type domain-containing protein3.3e-2460.8Show/hide
Query:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV
        L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SS                 F NQVMS LH V    F+VS+GSTGIV
Subjt:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTGIV

Query:  RGDDVCCLHAVFRAKLAGGPGGGVT
        RGDDVC LHAVFRAK  GGPGGGVT
Subjt:  RGDDVCCLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein8.6e-2558.46Show/hide
Query:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST
        D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    FSV +GST
Subjt:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGST

Query:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI
        GIVRGDDVC LHAVFRAK  GGPGGGVT +
Subjt:  GIVRGDDVCCLHAVFRAKLAGGPGGGVTAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCA
GCGTTTCAATAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGCCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCTATC
CTAGCATTTGTTAAGGGAAGTTTTGAGCAAGAAGTAGTTGTGCAGCATCTGAGAAGCTCTAGTGTGAGGCTAGTCGACTTTTCCTGTTTAGCTGAGCTTTTGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCA
GCGTTTCAATAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGCCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCTATC
CTAGCATTTGTTAAGGGAAGTTTTGAGCAAGAAGTAGTTGTGCAGCATCTGAGAAGCTCTAGTGTGAGGCTAGTCGACTTTTCCTGTTTAGCTGAGCTTTTGGCCTAG
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGPGGGVTAI
LAFVKGSFEQEVVVQHLRSSSVRLVDFSCLAELLA