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Spg019448 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019448
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:39908359..39910559
RNA-Seq ExpressionSpg019448
SyntenySpg019448
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-0942.74Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW
        PRGNR GLQT EL K                  VEIELP+PD LPTS ESS S+SS+  +                          EG    +  DDV W
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW

Query:  LHAIFRTKLAGGLGGGV
        LHAIFR K AGG GGGV
Subjt:  LHAIFRTKLAGGLGGGV

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-0941.94Show/hide
Query:  KVSEHLRERVKEEEEEEFQETKRPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQ---EGQRVS-------L
        +++E    RV+ E          PRGNR  LQT EL KT                 VEIELP+PD LPTS ESS S+SS+  +   E   V        +
Subjt:  KVSEHLRERVKEEEEEEFQETKRPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQ---EGQRVS-------L

Query:  ENDDVRWLHAIFRTKLAGGLGGGV
          DDV WLHA+FR K  GG GGGV
Subjt:  ENDDVRWLHAIFRTKLAGGLGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.7e-1045Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRWLHAIFRTKLAGGLGGGV
        PRGNR  L T +L KTVEIELPVPD LPTS ESS+S+SS+  +                          EG    +  DD+ WLHA+F  K AG  GGGV
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRWLHAIFRTKLAGGLGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.3e-1152.13Show/hide
Query:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQEGQRVSLENDDVRWLHAIFRTKLAGGLGGGVKF
        RPRGNR  LQT +L KT                 VEIELPVPD LPTS ES  S+S ST        +  DDV WLHA+FR K AGG GGGV F
Subjt:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQEGQRVSLENDDVRWLHAIFRTKLAGGLGGGVKF

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-0942.74Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW
        PRGNR GLQT EL K                  VEIELP+PD LPTS ESS S+SS+  +                          EG    +  DDV W
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW

Query:  LHAIFRTKLAGGLGGGV
        LHAIFR K AGG GGGV
Subjt:  LHAIFRTKLAGGLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.2e-0942.74Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW
        PRGNR GLQT EL K                  VEIELP+PD LPTS ESS S+SS+  +                          EG    +  DDV W
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW

Query:  LHAIFRTKLAGGLGGGV
        LHAIFR K AGG GGGV
Subjt:  LHAIFRTKLAGGLGGGV

A0A5A7TKT0 Reverse transcriptase2.6e-0941.94Show/hide
Query:  KVSEHLRERVKEEEEEEFQETKRPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQ---EGQRVS-------L
        +++E    RV+ E          PRGNR  LQT EL KT                 VEIELP+PD LPTS ESS S+SS+  +   E   V        +
Subjt:  KVSEHLRERVKEEEEEEFQETKRPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQ---EGQRVS-------L

Query:  ENDDVRWLHAIFRTKLAGGLGGGV
          DDV WLHA+FR K  GG GGGV
Subjt:  ENDDVRWLHAIFRTKLAGGLGGGV

A0A5A7UAH6 CCHC-type domain-containing protein1.8e-1045Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRWLHAIFRTKLAGGLGGGV
        PRGNR  L T +L KTVEIELPVPD LPTS ESS+S+SS+  +                          EG    +  DD+ WLHA+F  K AG  GGGV
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRWLHAIFRTKLAGGLGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.6e-1152.13Show/hide
Query:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQEGQRVSLENDDVRWLHAIFRTKLAGGLGGGVKF
        RPRGNR  LQT +L KT                 VEIELPVPD LPTS ES  S+S ST        +  DDV WLHA+FR K AGG GGGV F
Subjt:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDALPTSGESSRSSSSSTFQEGQRVSLENDDVRWLHAIFRTKLAGGLGGGVKF

A0A5D3DR18 Gag/pol protein1.2e-0942.74Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW
        PRGNR GLQT EL K                  VEIELP+PD LPTS ESS S+SS+  +                          EG    +  DDV W
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDALPTSGESSRSSSSSTFQ--------------------------EGQRVSLENDDVRW

Query:  LHAIFRTKLAGGLGGGV
        LHAIFR K AGG GGGV
Subjt:  LHAIFRTKLAGGLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAACCCACCACAGCGTAAGGCAACTCCTACCAATTTTCAGCCCACTTCCAGCCACATTCCTCATCATTTTCCATCAAAAGTTTCAGAGCACTTGAGGGA
GAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCAAGAAACTAAGAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCC
CAGTGCCTGATGCACTGCCAACGTCTGGTGAAAGTTCCAGATCAAGCTCCAGTTCTACATTTCAAGAGGGTCAACGGGTATCGTTAGAGAATGACGATGTTCGTTGGCTT
CATGCTATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGAAATTCTGTCCACCCGATATAACCATGATTAGTAAGTTGACCCTTCACACGTTGTTCGTAAC
TATAGTTAGGTCTAAAGTTCGTTTTACCCATATAGCACTTCTTGTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAACCCACCACAGCGTAAGGCAACTCCTACCAATTTTCAGCCCACTTCCAGCCACATTCCTCATCATTTTCCATCAAAAGTTTCAGAGCACTTGAGGGA
GAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCAAGAAACTAAGAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCC
CAGTGCCTGATGCACTGCCAACGTCTGGTGAAAGTTCCAGATCAAGCTCCAGTTCTACATTTCAAGAGGGTCAACGGGTATCGTTAGAGAATGACGATGTTCGTTGGCTT
CATGCTATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGAAATTCTGTCCACCCGATATAACCATGATTAGTAAGTTGACCCTTCACACGTTGTTCGTAAC
TATAGTTAGGTCTAAAGTTCGTTTTACCCATATAGCACTTCTTGTTCCTTAA
Protein sequenceShow/hide protein sequence
MDSTNPPQRKATPTNFQPTSSHIPHHFPSKVSEHLRERVKEEEEEEFQETKRPRGNRSGLQTRELAKTVEIELPVPDALPTSGESSRSSSSSTFQEGQRVSLENDDVRWL
HAIFRTKLAGGLGGGVKFCPPDITMISKLTLHTLFVTIVRSKVRFTHIALLVP