CuGenDBv2

Gene ID	Spg019449
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Exonuclease 1
Genome location	scaffold1:39927671..39934688
RNA-Seq Expression	Spg019449
Synteny	Spg019449
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0005488 - binding (molecular function) GO:0017108 - 5'-flap endonuclease activity (molecular function) GO:0035312 - 5'-3' exodeoxyribonuclease activity (molecular function)
InterPro domains	IPR006084 - XPG/Rad2 endonuclease IPR029060 - PIN-like domain superfamily IPR032641 - Exonuclease 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_020541344.1 exonuclease 1 [Jatropha curcas]

6.3e-22

68.97

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHE+NGNS AA+ECYQKAVDITP IAHELIQ+LK                MTFL +SKQVD V+TEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

XP_022954760.1 exonuclease 1 isoform X1 [Cucurbita moschata]

6.3e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

XP_022954763.1 exonuclease 1 isoform X3 [Cucurbita moschata]

6.3e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

XP_022994762.1 exonuclease 1 isoform X1 [Cucurbita maxima]

6.3e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

XP_022994764.1 exonuclease 1 isoform X2 [Cucurbita maxima]

6.3e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

TrEMBL top hits

e value

%identity

Alignment

A0A067JNV0 Exonuclease 1

3.0e-22

68.97

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHE+NGNS AA+ECYQKAVDITP IAHELIQ+LK                MTFL +SKQVD V+TEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

A0A6J1GRS7 Exonuclease 1

3.0e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

A0A6J1K294 Exonuclease 1

3.0e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

A0A6J1K3T0 Exonuclease 1

3.0e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

A0A6J1K615 Exonuclease 1

3.0e-22

70.11

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        TRKEN ARA EHETNGNS AA+ECYQKAVDITP+IA+ELIQ+LK                MTFL IS QVD VLTEDSDLIPFGCPR
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

SwissProt top hits

e value

%identity

Alignment

Q60GC1 Exonuclease 1

8.0e-20

62.07

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        +RKEN  RA+EHE+ GNS AAFECYQKAVDITP IA ELIQ+LK                MTFL ++K VD V+TEDSDLIPFGC R
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

Q8L6Z7 Exonuclease 1

2.1e-20

60.92

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        +RKEN ARA EHE NGNS AA+ECY KAVDI+P IAHELIQ+L+                M FL I+KQVD ++TEDSDLIPFGC R
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

Arabidopsis top hits

e value

%identity

Alignment

AT1G29630.1 5'-3' exonuclease family protein

8.7e-22

56.7

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPRE-QNINYGVV
        +RKEN ARA EHE NGNS AA+ECY KAVDI+P IAHELIQ+L+                M FL I+KQVD ++TEDSDLIPFGC R  +++ Y  V
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPRE-QNINYGVV

AT1G29630.2 5'-3' exonuclease family protein

1.5e-21

60.92

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Query:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR
        +RKEN ARA EHE NGNS AA+ECY KAVDI+P IAHELIQ+L+                M FL I+KQVD ++TEDSDLIPFGC R
Subjt:  TRKENFARAREHETNGNSVAAFECYQKAVDITPLIAHELIQMLK----------------MTFLVISKQVDVVLTEDSDLIPFGCPR

Sequences

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CDS sequence

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ATGGCAAAAACGAGAGCAAGAAAAGAGAGGGAGAATGAGGAGGAAGAGATACCTATTACCCCTGAAGTACAGAAAGTAAAAGCAAAGAAGAAGAAGACGTCGGAGGAGAA
AGAAGCCAAACGAAGGAGAAGGCAGCAACGGGCTGAGGAGCAAGAGGCTGTCCAGAAGGCGACAGACAATGTTGCTTCTACAGTGGAGGAAGGAAATCCGAAAGAATCTA
AAGTGCAGAATCCAGAGGATGATGAAGCGATAGTCGCAGATACGGAGAAAATTCAAGAAGAGAATACTGAGGAGAATCAAGAAAAGCTGACTAACGAGGTGCAAGAAGGA
CAGGCAGAGGTTGTGCCTGAAAAAGATAATGAACAGGAGCAAGAGACTCGTGTTGAGGTCATCATGCTTGAAGTACCGAAACGACGCGAGGTGAAGCGAAAGGCTGGGCG
CGTTCAGGTAATTCAAACTGATACCCTGTCACCACCGTCGTCGGATTCTGAGAAAGAGAAGGCGGAACGAGAGGAACGAGAAAAAAAGGAAGCTGAGGACAGAGAAAGAG
AAGAAGCAGCGGACGAAACCTTGAGAAAGCTTAAAGCAGACAGAGGCAAAGGAATTGCTGAAGCATCGGATGAACCTGTAGAGGAAGCAAGAGAAGGACCTTTCCTCCGC
TTCATCAATGAGCTTGCTCGAGCAAAATACCGAGAGATGCTAAGAAGGGATTTCCTATTCGAAAGAAGAAGAAATATTTATAAGGGCGGAGCGAAGAATGAACCCTCTGG
AGCTTCATCTCCTTTCTTCTTTTTGCCTCTCGTCCTTGGCCTCTTCAAAGATGCAATCGTTGGCCCCATTGCAGTCGTCATTCTTGTGATTGCAAACTCCTCCGTCATTG
TTGGGACAAGAAAAGAAAATTTCGCACGTGCAAGAGAACATGAAACGAATGGCAATTCTGTTGCTGCCTTCGAGTGCTACCAGAAGGCCGTTGATATAACACCTTTGATC
GCCCATGAACTAATTCAAATGCTAAAAATGACCTTCTTGGTTATCAGCAAGCAGGTTGATGTCGTTCTTACTGAGGACTCTGATCTAATACCGTTTGGTTGTCCAAGGGA
GCAGAATATCAATTATGGAGTCGTGCATGAAAGTATCACTAGAGGTGTTAAAGAGAACTTCTTTGATTTGGAGCAATATCCTCTGATTTCAAAACTTACGCATCGTTTCC
AGGTAGCCGGTGAGGGAATGAAAAATCTTGATTTTAAACTTAAGATTATTGGAGGAGACACATCATCTATTCTTGTGATTTTTGATGCTATTGAGGAAAGCCACTGGTCC
TCTTTACTACTCTTTGCCACACTGATGATTACTTCTGAGAAGGCAAGGATGATCCATAGCCAAATATGGATCTCCTATTCTCATTATCGAACTGCCAAAGGCACTGCACG
GATCGTCGACAAGGGCGTCGAATTCGAACAAGAGCAAACTATGGATTTTGGTGATAAAAGTGCCCAAAAGGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAGGGG
AGTCAAAAGAGGACAACTGTGAAGAAAAAACCCAAAAAGAATTGAAGTTGGCCCAAGAAAAGAAGCCCAATCCGCAGCTGGAAGTTCTGGAAAAAGCCTAG

mRNA sequence

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Protein sequence

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MAKTRARKERENEEEEIPITPEVQKVKAKKKKTSEEKEAKRRRRQQRAEEQEAVQKATDNVASTVEEGNPKESKVQNPEDDEAIVADTEKIQEENTEENQEKLTNEVQEG
QAEVVPEKDNEQEQETRVEVIMLEVPKRREVKRKAGRVQVIQTDTLSPPSSDSEKEKAEREEREKKEAEDREREEAADETLRKLKADRGKGIAEASDEPVEEAREGPFLR
FINELARAKYREMLRRDFLFERRRNIYKGGAKNEPSGASSPFFFLPLVLGLFKDAIVGPIAVVILVIANSSVIVGTRKENFARAREHETNGNSVAAFECYQKAVDITPLI
AHELIQMLKMTFLVISKQVDVVLTEDSDLIPFGCPREQNINYGVVHESITRGVKENFFDLEQYPLISKLTHRFQVAGEGMKNLDFKLKIIGGDTSSILVIFDAIEESHWS
SLLLFATLMITSEKARMIHSQIWISYSHYRTAKGTARIVDKGVEFEQEQTMDFGDKSAQKEAIQAQFPCLGQGESKEDNCEEKTQKELKLAQEKKPNPQLEVLEKA

Spg019449 (gene) of Sponge gourd (cylindrica) v1 genome