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Spg019453 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019453
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold1:41138599..41153756
RNA-Seq ExpressionSpg019453
SyntenySpg019453
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]7.5e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0563.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.7e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-0467.57Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHL
        VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHL
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.7e-0562.79Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDE
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDE
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class3.6e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
A0A5A7TKJ4 Gag/pol protein6.2e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein2.8e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLG
A0A5A7VKV9 Gag/pol protein6.8e-0567.57Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHL
        VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHL
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-948.1e-0662.79Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDE
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATCTCACGGTGCAACCTAATGGAGGAGACCGTTAGTTCCCAGGTAGGAGACCGCCCGAACCACTTTGAACCAGCAACGATAAACACGAACCGAGCAAAATTCCA
GCTGAACCGGACCAAATCGGTCCCAGTCCAGATGGACCGTGCGAACATGACTGCCAGCTACCTTGAACCGCCTGAAACACGTCCTCGCGAACCGCCGTACATCGTGACAG
CGTCTATTCTTCCTCTTTTTCTTCGATTTCAACCATTCAATTCACCAACTGCTTGTGAAATAATCATGAACTACTGCGAACACCACCACTATGGCTACACCGGAGTTCCT
CTCGGGCTCGGAGAGGACGGCTCGCCTTTGTTCAAGCCCCGAAATCAGCCCTTAAGGCAACACACATCTACTTACCCCAATAGGGGAACGAGTGAATTCCATCTTGTACT
GTTATGTTCCCAGCCTCCATCGGGTCTTGCCCCTGAAATGGATACCCCCACTCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGG
CCGTATCACATAGTGTTACCAGGATAAGACTAGTTAGATATAATTTAGTGGTCGTTGCGAGGTCTCGGATGGTTGCTACTTTATGTATGAGGGGAGAAAAAACAGAGGAA
TCTGGAAAAACCAAAAAATGCGACCGCATTTCTGGGAAGGCTAATATGAAATGCGACCGCGGGTGTTTCGAGTCCATCGCGGGTCACTTTGCAATGCTATGTGAGTTTGA
TCCTGAAAGGGACAAGCAATATCGGCTCAGCGTCTCGACGCCACGAACTTTGATCTCCGTGTCGAGTTCTCGTCGGCGTCGAAACGCTAGGGGCAGCGTCTCGACGTTGT
CCCCAATCCGAGCCTTGGTGCCTTTTTTCTCGCTTTTGTCTCGGTCTTTCTCGAGCCCCCAGCCGCCGCCTCCCCCTTCAGCCCTGCCACCGTCGAATCGTGCCACCGTC
GTGGGTTGTCGTCGCCGCCACCCCTCTGCTTCGCGATTTCTCTCTCCGCGCAGTTTTGAGCTCGATTTAAGTATTCTTTTGTCCGTATTGGTTAGATCTCGCGCGGACAG
CAACTCGAAGCCCCGTCTCCTCCGCGTTTCAACCTTAAAAATCTTAGATCTCGCGTTCCTACCAATTCGGAGTCCCGTCGTCCTCGTTTCAGCCGATTCCGCCTCTTTCC
AGCAGCATTCTTGGTTGTTGTTGGTGTCGTTTGGCGTTTCCGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAG
GCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCACATCTAGGAGAAGTAGATGAGTCCGTGATTACGAACACTCGTGGAGGATTGACTTACCGGCATAGGTC
TACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAACTGTGGGTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATCTCACGGTGCAACCTAATGGAGGAGACCGTTAGTTCCCAGGTAGGAGACCGCCCGAACCACTTTGAACCAGCAACGATAAACACGAACCGAGCAAAATTCCA
GCTGAACCGGACCAAATCGGTCCCAGTCCAGATGGACCGTGCGAACATGACTGCCAGCTACCTTGAACCGCCTGAAACACGTCCTCGCGAACCGCCGTACATCGTGACAG
CGTCTATTCTTCCTCTTTTTCTTCGATTTCAACCATTCAATTCACCAACTGCTTGTGAAATAATCATGAACTACTGCGAACACCACCACTATGGCTACACCGGAGTTCCT
CTCGGGCTCGGAGAGGACGGCTCGCCTTTGTTCAAGCCCCGAAATCAGCCCTTAAGGCAACACACATCTACTTACCCCAATAGGGGAACGAGTGAATTCCATCTTGTACT
GTTATGTTCCCAGCCTCCATCGGGTCTTGCCCCTGAAATGGATACCCCCACTCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGG
CCGTATCACATAGTGTTACCAGGATAAGACTAGTTAGATATAATTTAGTGGTCGTTGCGAGGTCTCGGATGGTTGCTACTTTATGTATGAGGGGAGAAAAAACAGAGGAA
TCTGGAAAAACCAAAAAATGCGACCGCATTTCTGGGAAGGCTAATATGAAATGCGACCGCGGGTGTTTCGAGTCCATCGCGGGTCACTTTGCAATGCTATGTGAGTTTGA
TCCTGAAAGGGACAAGCAATATCGGCTCAGCGTCTCGACGCCACGAACTTTGATCTCCGTGTCGAGTTCTCGTCGGCGTCGAAACGCTAGGGGCAGCGTCTCGACGTTGT
CCCCAATCCGAGCCTTGGTGCCTTTTTTCTCGCTTTTGTCTCGGTCTTTCTCGAGCCCCCAGCCGCCGCCTCCCCCTTCAGCCCTGCCACCGTCGAATCGTGCCACCGTC
GTGGGTTGTCGTCGCCGCCACCCCTCTGCTTCGCGATTTCTCTCTCCGCGCAGTTTTGAGCTCGATTTAAGTATTCTTTTGTCCGTATTGGTTAGATCTCGCGCGGACAG
CAACTCGAAGCCCCGTCTCCTCCGCGTTTCAACCTTAAAAATCTTAGATCTCGCGTTCCTACCAATTCGGAGTCCCGTCGTCCTCGTTTCAGCCGATTCCGCCTCTTTCC
AGCAGCATTCTTGGTTGTTGTTGGTGTCGTTTGGCGTTTCCGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAG
GCTGGGGACATGACAACACAAGAAGGAATTCACTCATTCCCACATCTAGGAGAAGTAGATGAGTCCGTGATTACGAACACTCGTGGAGGATTGACTTACCGGCATAGGTC
TACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAACTGTGGGTCTTTAG
Protein sequenceShow/hide protein sequence
MGISRCNLMEETVSSQVGDRPNHFEPATINTNRAKFQLNRTKSVPVQMDRANMTASYLEPPETRPREPPYIVTASILPLFLRFQPFNSPTACEIIMNYCEHHHYGYTGVP
LGLGEDGSPLFKPRNQPLRQHTSTYPNRGTSEFHLVLLCSQPPSGLAPEMDTPTRMSPTWMLWIIASVSNTRWAVSHSVTRIRLVRYNLVVVARSRMVATLCMRGEKTEE
SGKTKKCDRISGKANMKCDRGCFESIAGHFAMLCEFDPERDKQYRLSVSTPRTLISVSSSRRRRNARGSVSTLSPIRALVPFFSLLSRSFSSPQPPPPPSALPPSNRATV
VGCRRRHPSASRFLSPRSFELDLSILLSVLVRSRADSNSKPRLLRVSTLKILDLAFLPIRSPVVLVSADSASFQQHSWLLLVSFGVSAWVRVANTPTQYAFLFGDKTEWE
AGDMTTQEGIHSFPHLGEVDESVITNTRGGLTYRHRSTSMDTEMFYSEKSSTVGL