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Spg019473 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019473
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold1:40600781..40605377
RNA-Seq ExpressionSpg019473
SyntenySpg019473
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]2.7e-1044.55Show/hide
Query:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        +YKLN KLYLVSC VFENE+F                           ++PRGNR SLQTGELDKT                 VEIELP P+ LPTSAES
Subjt:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  FRTSSKHFKE
         R++S  + E
Subjt:  FRTSSKHFKE

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.5e-0854.24Show/hide
Query:  LYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKE
        +++ S R+   E+ ++PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ES +++S  + E
Subjt:  LYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKE

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.5e-0845.74Show/hide
Query:  SGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKHFKE
        SG  W    +W+      L ++  R+   E+ ++PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAESF ++S  + E
Subjt:  SGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKHFKE

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]8.7e-0943.81Show/hide
Query:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        V++ N  LYLVSCRVF +EDF                           ++PRGNRSSLQTG+LDKT                 VEIELPVPDT PTSAES
Subjt:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  FRTSS
          ++S
Subjt:  FRTSS

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]3.3e-0839.84Show/hide
Query:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT----------------------------------
        V+K N KLYLVSCRVFENE F                           ++ RGNR SLQTGELDKT                                  
Subjt:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT----------------------------------

Query:  VEIELPVPDTLPTSAESFRTSSK
        VEIELPVPDTLPTSAESF ++ +
Subjt:  VEIELPVPDTLPTSAESFRTSSK

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein1.3e-1044.55Show/hide
Query:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        +YKLN KLYLVSC VFENE+F                           ++PRGNR SLQTGELDKT                 VEIELP P+ LPTSAES
Subjt:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  FRTSSKHFKE
         R++S  + E
Subjt:  FRTSSKHFKE

A0A5A7V2F2 Uncharacterized protein1.2e-0854.24Show/hide
Query:  LYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKE
        +++ S R+   E+ ++PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ES +++S  + E
Subjt:  LYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKE

A0A5A7VIY9 Uncharacterized protein7.2e-0945.74Show/hide
Query:  SGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKHFKE
        SG  W    +W+      L ++  R+   E+ ++PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAESF ++S  + E
Subjt:  SGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRTSSKHFKE

A0A5D3BQ75 Uncharacterized protein4.2e-0943.81Show/hide
Query:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        V++ N  LYLVSCRVF +EDF                           ++PRGNRSSLQTG+LDKT                 VEIELPVPDT PTSAES
Subjt:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  FRTSS
          ++S
Subjt:  FRTSS

A0A5D3CSJ5 Putative polyprotein1.6e-0839.84Show/hide
Query:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT----------------------------------
        V+K N KLYLVSCRVFENE F                           ++ RGNR SLQTGELDKT                                  
Subjt:  VYKLNPKLYLVSCRVFENEDF---------------------------DVPRGNRSSLQTGELDKT----------------------------------

Query:  VEIELPVPDTLPTSAESFRTSSK
        VEIELPVPDTLPTSAESF ++ +
Subjt:  VEIELPVPDTLPTSAESFRTSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTTGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGA
AAATGAAGATTTTGATGTGCCAAGAGGAAATAGGTCGAGTTTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTTCAGAACAAGCTCCAAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATACGAAAAGCTCATGCAAA
GCCAGCCATAGCAGAATCTGGGTGCAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTTGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGA
AAATGAAGATTTTGATGTGCCAAGAGGAAATAGGTCGAGTTTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTG
CTGAAAGTTTCAGAACAAGCTCCAAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATACGAAAAGCTCATGCAAA
GCCAGCCATAGCAGAATCTGGGTGCAAAACTGA
Protein sequenceShow/hide protein sequence
MIFEQTRRISGVLWCFEHSWVYKLNPKLYLVSCRVFENEDFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRTSSKHFKERVKEEEEEEFRGFEVEEDTKSSCK
ASHSRIWVQN