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Spg019499 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019499
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold1:39021858..39025516
RNA-Seq ExpressionSpg019499
SyntenySpg019499
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.3e-0951.06Show/hide
Query:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        + PRG R SLQT EL KT                 VEIELPV DTLP SAESS ++S S         + EDDV WLH +FR K AGG GGGVT
Subjt:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-0948.51Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG
        PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+FR K  GG GGG
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.5e-1053.26Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        PRG R SLQT +L KT                 VEIELPVPDTLPTSAES  ++S ST        +  DDV WLHA+FR K AGG GGGVT
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.5e-1042.62Show/hide
Query:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGPRVSLEEDDV
        + PRG RSSLQT EL KT                 VEIELPVPDTLPTSAES  ++SS+  +                          EG    +  DDV
Subjt:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGPRVSLEEDDV

Query:  RWLHAIFRTKLAGGLGGGVTHR
         WLH +FR K+AGG GGGVT R
Subjt:  RWLHAIFRTKLAGGLGGGVTHR

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-0948.51Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG
        PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+FR K  GG GGG
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase8.5e-1048.51Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG
        PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+FR K  GG GGG
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

A0A5A7VIY9 Uncharacterized protein1.7e-1042.62Show/hide
Query:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGPRVSLEEDDV
        + PRG RSSLQT EL KT                 VEIELPVPDTLPTSAES  ++SS+  +                          EG    +  DDV
Subjt:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ--------------------------EGPRVSLEEDDV

Query:  RWLHAIFRTKLAGGLGGGVTHR
         WLH +FR K+AGG GGGVT R
Subjt:  RWLHAIFRTKLAGGLGGGVTHR

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.7e-1053.26Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        PRG R SLQT +L KT                 VEIELPVPDTLPTSAES  ++S ST        +  DDV WLHA+FR K AGG GGGVT
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.1e-0951.06Show/hide
Query:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        + PRG R SLQT EL KT                 VEIELPV DTLP SAESS ++S S         + EDDV WLH +FR K AGG GGGVT
Subjt:  DSPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDVRWLHAIFRTKLAGGLGGGVT

A0A5D3D150 Reverse transcriptase8.5e-1048.51Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG
        PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS ++SS+  +   E   V        +  DDV WLHA+FR K  GG GGG
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSSTFQ---EGPRVS-------LEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAAGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTTTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGGGTATAGAATCTGGAAAATCTTGAAAGTAGAATGTGAATGTGATTCGCCAAGAGGAATTAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCTACGTTCCAGGAGGGTCCACGGGTATCGTTAGAGGAGGACGATGTT
CGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACACACAGGCCGATTCCAGCGTCTTCCTCCCTGCCGTGTGTTGCGTCGCCGCC
AGCAGCCAAGCCCCGCCGTCCCTCTTCATCTCTTCCTCCCTCGCGTGTTGTTCGGGTTGCAGCAGGTCCCTCTTCGCGTGAGCAGTCGCAGTTCCCGTCGTCGATCTCTC
TCTCTCTCTCTCTCGCGTTCTTCCTCGCGTTGAAGCCGCCGGCGTCAAGACCCACGGGCAGCAGCAGCTCGCGCCGCCGTTCGTCTCCCTCAAGCTTGAGCCGTTCTCCT
CGCGTAGGTCAGGGACCTAATGGTGAAAGAATTGAACGTTGGGTGAGTGTCAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCACGTCACCATTGGTTTAAGAGGAGC
ATCGAGGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGTCTAGAAAGCAAGTGTTGGGCGCCTGGGAAAGGGCCAATACTTTGCTAAGTCATCGGTGCACCTTGG
GTACAAATGGTCAAGGGCCGATGCACAGTTCGGGGCCTTGGGTACAAATGGTCAAGGGTCGAACTCCGAGTTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAG
GGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAAGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTTTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGGGTATAGAATCTGGAAAATCTTGAAAGTAGAATGTGAATGTGATTCGCCAAGAGGAATTAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCTACGTTCCAGGAGGGTCCACGGGTATCGTTAGAGGAGGACGATGTT
CGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACACACAGGCCGATTCCAGCGTCTTCCTCCCTGCCGTGTGTTGCGTCGCCGCC
AGCAGCCAAGCCCCGCCGTCCCTCTTCATCTCTTCCTCCCTCGCGTGTTGTTCGGGTTGCAGCAGGTCCCTCTTCGCGTGAGCAGTCGCAGTTCCCGTCGTCGATCTCTC
TCTCTCTCTCTCTCGCGTTCTTCCTCGCGTTGAAGCCGCCGGCGTCAAGACCCACGGGCAGCAGCAGCTCGCGCCGCCGTTCGTCTCCCTCAAGCTTGAGCCGTTCTCCT
CGCGTAGGTCAGGGACCTAATGGTGAAAGAATTGAACGTTGGGTGAGTGTCAGTGCACCTCGGGTACAAATGGTCGAGGGGTGGCACGTCACCATTGGTTTAAGAGGAGC
ATCGAGGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGTCTAGAAAGCAAGTGTTGGGCGCCTGGGAAAGGGCCAATACTTTGCTAAGTCATCGGTGCACCTTGG
GTACAAATGGTCAAGGGCCGATGCACAGTTCGGGGCCTTGGGTACAAATGGTCAAGGGTCGAACTCCGAGTTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAG
GGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGTGTTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFPLVFRAFWVVQVESEALFGYRIWKILKVECECDSPRGIRSSLQTRELAKTVEIELPVPDTLPTSAESSRTSSSSTFQEGPRVSLEEDDV
RWLHAIFRTKLAGGLGGGVTHRPIPASSSLPCVASPPAAKPRRPSSSLPPSRVVRVAAGPSSREQSQFPSSISLSLSLAFFLALKPPASRPTGSSSSRRRSSPSSLSRSP
RVGQGPNGERIERWVSVSAPRVQMVEGWHVTIGLRGASRPWVQMVKGRCDESRKQVLGAWERANTLLSHRCTLGTNGQGPMHSSGPWVQMVKGRTPSSVESIVALGTNGQ
GTVRLEGSVLESHVRAKYEC