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Spg019502 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019502
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:39263482..39266675
RNA-Seq ExpressionSpg019502
SyntenySpg019502
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]2.8e-0973.81Show/hide
Query:  VHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS
        V+TG++ LLTL+VL DNDA+VSAGR PLR R WECWA PTTS
Subjt:  VHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1062.12Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLR R WEC  GPTTS+
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.2e-0757.58Show/hide
Query:  RPRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS
        + RGNR SLQT EL KT              L TLSVL +NDA VSAGR PLR R WEC  GPTTS
Subjt:  RPRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1062.12Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLR R WEC  GPTTS+
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY

TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]3.5e-0753.25Show/hide
Query:  RPRGNRSSLQTRELAKTPE----------AIWYRVHTGHI-PLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS
        + RGNR SLQT EL KT            +++  V T  I  L TLSVL +NDA VSAGR PLR R WEC  GPTTS
Subjt:  RPRGNRSSLQTRELAKTPE----------AIWYRVHTGHI-PLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.4e-0973.81Show/hide
Query:  VHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS
        V+TG++ LLTL+VL DNDA+VSAGR PLR R WECWA PTTS
Subjt:  VHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase9.5e-1162.12Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLR R WEC  GPTTS+
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY

A0A5A7TDY3 Uncharacterized protein5.8e-0857.58Show/hide
Query:  RPRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS
        + RGNR SLQT EL KT              L TLSVL +NDA VSAGR PLR R WEC  GPTTS
Subjt:  RPRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase9.5e-1162.12Show/hide
Query:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY
        PRGNR SLQT E+ KT             PL TLSVL DNDAVVSAG+APLR R WEC  GPTTS+
Subjt:  PRGNRSSLQTRELAKTPEAIWYRVHTGHIPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSY

A0A5D3DUS7 Uncharacterized protein1.7e-0753.25Show/hide
Query:  RPRGNRSSLQTRELAKTPE----------AIWYRVHTGHI-PLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS
        + RGNR SLQT EL KT            +++  V T  I  L TLSVL +NDA VSAGR PLR R WEC  GPTTS
Subjt:  RPRGNRSSLQTRELAKTPE----------AIWYRVHTGHI-PLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATCTCACGGTGCAACCTAGTGGAGGAGACTGTTCCGGGTCTGTTCCGAGGTCAAGCAAAGGCAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTT
TTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGAGGAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGCGTTCTCTGTGTTCTGGGCATGTCTGGACAAATCAGTT
GGGAATCTCGTTTTTATTTCTTGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTCAT
ATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACCAAGAGGATGGGAGTGCTGGGCGGGTCCCACTACATC
GTATGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAATCTCACGGTGCAACCTAGTGGAGGAGACTGTTCCGGGTCTGTTCCGAGGTCAAGCAAAGGCAGCCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTT
TTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGAGGAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGCGTTCTCTGTGTTCTGGGCATGTCTGGACAAATCAGTT
GGGAATCTCGTTTTTATTTCTTGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTCAT
ATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACCAAGAGGATGGGAGTGCTGGGCGGGTCCCACTACATC
GTATGACTAG
Protein sequenceShow/hide protein sequence
MRISRCNLVEETVPGLFRGQAKAAIAEAEFNLSTSGFLFGLSYTEGTKRRKIEGSREARICVLCVLGMSGQISWESRFYFLRPRGNRSSLQTRELAKTPEAIWYRVHTGH
IPLLTLSVLHDNDAVVSAGRAPLRPRGWECWAGPTTSYD