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Spg019550 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019550
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationscaffold5:31980481..31982827
RNA-Seq ExpressionSpg019550
SyntenySpg019550
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]4.3e-2595.24Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVK+EDA
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
XP_022927635.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata]3.3e-2595.24Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKMED+
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]3.3e-2595.24Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKMED+
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
XP_023520390.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo]1.5e-2596.83Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKMEDA
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]1.5e-2596.83Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKMEDA
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
TrEMBL top hitse value%identityAlignment
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 113.5e-2593.65Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTID+YQVKMED+
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 112.1e-2595.24Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVK+EDA
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
A0A6J1EPI6 Mediator of RNA polymerase II transcription subunit 111.6e-2595.24Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKMED+
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 111.6e-2595.24Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRITNEL CKKLEYMISKLDGMKQTIDEYQVKMED+
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 111.7e-2493.65Show/hide
Query:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
        I DIQVTLRDEIKSACEYRPFEKCDYSSRI NEL CKKLEYMI KLDGMKQTIDEYQVKMEDA
Subjt:  IMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 111.3e-1651.22Show/hide
Query:  SGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEY
        SGP    V + C   +          + DIQVTLR+EIKSACEYRPFEKCDY++RI NE+  +KLEY++++L+ +KQT D Y
Subjt:  SGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein9.2e-1851.22Show/hide
Query:  SGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEY
        SGP    V + C   +          + DIQVTLR+EIKSACEYRPFEKCDY++RI NE+  +KLEY++++L+ +KQT D Y
Subjt:  SGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGTATCGCTCCACCCAGAATGACCAATCATCTGGGCCCCCTTCGAGAAAAGTATGGAATGATTGTGTTAGAGTATTACTGGGAATATACTGGGATATTGGTAG
TGACATAATGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAGTACCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATCACTAATGAGCTTTCCT
GCAAGAAACTGGAATACATGATTTCAAAGTTGGATGGAATGAAACAAACCATCGATGAGTATCAAGTGAAAATGGAAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGTATCGCTCCACCCAGAATGACCAATCATCTGGGCCCCCTTCGAGAAAAGTATGGAATGATTGTGTTAGAGTATTACTGGGAATATACTGGGATATTGGTAG
TGACATAATGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAGTACCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATCACTAATGAGCTTTCCT
GCAAGAAACTGGAATACATGATTTCAAAGTTGGATGGAATGAAACAAACCATCGATGAGTATCAAGTGAAAATGGAAGATGCTTGA
Protein sequenceShow/hide protein sequence
MVKYRSTQNDQSSGPPSRKVWNDCVRVLLGIYWDIGSDIMDIQVTLRDEIKSACEYRPFEKCDYSSRITNELSCKKLEYMISKLDGMKQTIDEYQVKMEDA