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Spg019577 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019577
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:29303903..29307551
RNA-Seq ExpressionSpg019577
SyntenySpg019577
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RDX62411.1 hypothetical protein CR513_59264, partial [Mucuna pruriens]9.5e-0444.64Show/hide
Query:  PSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLCA-LPHRPLSEESLLLHIIEGLS
        P+     + +EI  I Q P E  H+YW+RFN LCA  PH  +SE+ L+ +  EGLS
Subjt:  PSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLCA-LPHRPLSEESLLLHIIEGLS
TrEMBL top hitse value%identityAlignment
A0A371E8Q4 Retrotrans_gag domain-containing protein (Fragment)4.6e-0444.64Show/hide
Query:  PSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLCA-LPHRPLSEESLLLHIIEGLS
        P+     + +EI  I Q P E  H+YW+RFN LCA  PH  +SE+ L+ +  EGLS
Subjt:  PSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLCA-LPHRPLSEESLLLHIIEGLS
A0A371HCS3 Pol polyprotein (Fragment)7.8e-0444.64Show/hide
Query:  PSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLC-ALPHRPLSEESLLLHIIEGLS
        P+     + +EI  I Q P E  HKYW+RFN LC   PH  +SE+ L+ +  EGLS
Subjt:  PSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLC-ALPHRPLSEESLLLHIIEGLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCACTGATCTCTCTAATGAACAAGTTGTTTATGGTTCAAC
CACTAAACAGGAGTTCCTCTCGGGCCAGGAGAGGACAGCGCGTCTTTGTAATTCGAGCATAGGTAACATTGGGAGCCAACCACGCATCTTGGTGTTAATTCGGGCATTTT
TTAGCCATCTCGAAGTCCGTGGACAGCGAGGAGGCAAAAAGACCCAAGTGGACCATGACGGGTCTGAAAAGAAGTATCAAGAGAGCGCCATGGCCGAGTGCATGATGCAA
GACCTAGTAGCTCCTGATTCGAGTCATCTCCCATCTCTTGAAGACCTTGAAGTCACCAGAGAAATCATATACATCACCCAAGCACCCGAGGAAGAATTTCACAAGTACTG
GGATCGCTTCAATGGGTTATGTGCGCTTCCCCATCGCCCACTATCTGAGGAGTCCTTACTCTTGCACATCATTGAAGGACTGAGCGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCACTGATCTCTCTAATGAACAAGTTGTTTATGGTTCAAC
CACTAAACAGGAGTTCCTCTCGGGCCAGGAGAGGACAGCGCGTCTTTGTAATTCGAGCATAGGTAACATTGGGAGCCAACCACGCATCTTGGTGTTAATTCGGGCATTTT
TTAGCCATCTCGAAGTCCGTGGACAGCGAGGAGGCAAAAAGACCCAAGTGGACCATGACGGGTCTGAAAAGAAGTATCAAGAGAGCGCCATGGCCGAGTGCATGATGCAA
GACCTAGTAGCTCCTGATTCGAGTCATCTCCCATCTCTTGAAGACCTTGAAGTCACCAGAGAAATCATATACATCACCCAAGCACCCGAGGAAGAATTTCACAAGTACTG
GGATCGCTTCAATGGGTTATGTGCGCTTCCCCATCGCCCACTATCTGAGGAGTCCTTACTCTTGCACATCATTGAAGGACTGAGCGCCTAA
Protein sequenceShow/hide protein sequence
MCVRNTSWVKLPFYPWVTSGSLSTTDLSNEQVVYGSTTKQEFLSGQERTARLCNSSIGNIGSQPRILVLIRAFFSHLEVRGQRGGKKTQVDHDGSEKKYQESAMAECMMQ
DLVAPDSSHLPSLEDLEVTREIIYITQAPEEEFHKYWDRFNGLCALPHRPLSEESLLLHIIEGLSA