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Spg019578 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019578
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:31137564..31142059
RNA-Seq ExpressionSpg019578
SyntenySpg019578
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]9.9e-1654.72Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  V IELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVYI
         ESV++
Subjt:  IESVYI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.5e-1955.08Show/hide
Query:  IRKAHAKPAIAESGCK------------------TSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAES
        I K +AKPAIAESGC                    ST F SK GG LVFS  L           SI PRGNR +L TG+LDKTV IELPVPDTLPTSAES
Subjt:  IRKAHAKPAIAESGCK------------------TSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVYI
        S+++SSTW+ELY ESV++
Subjt:  SRTSSSTWVELYIESVYI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]5.8e-1664.71Show/hide
Query:  STGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAESSRTSSSTWVELYIESVYI
        STG SSKP G LVFS  LS+     + +    +WPRGNR SLQT ELDKT  IELPVPDTLPTSAESS ++SSTW+ELY ESV++
Subjt:  STGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAESSRTSSSTWVELYIESVYI

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]7.6e-1636.25Show/hide
Query:  KTHH-RLDFLSAHFHFISHLFPPKLSEHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKT-STGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--
        K HH +L     +F    H FP KLSEH +ERVK EEEEEFRGLRLKKI K+  K     + C+  STGFSSKP G LVFS  LSI       +   W  
Subjt:  KTHH-RLDFLSAHFHFISHLFPPKLSEHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKT-STGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--

Query:  -----------PRGNRSSLQTGELDK--------------------------------------------------------------------------
                   PRGNRSSLQTG+LDK                                                                          
Subjt:  -----------PRGNRSSLQTGELDK--------------------------------------------------------------------------

Query:  -----TVAIELPVPDTLPTSAESSRTSSSTWVELYIESVY
             ++ IEL VPDTLPTSAESS ++SSTW+E   E  Y
Subjt:  -----TVAIELPVPDTLPTSAESSRTSSSTWVELYIESVY

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.9e-1654.72Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  V IELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVYI
         ESV++
Subjt:  IESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.8e-1654.72Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  V IELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVYI
         ESV++
Subjt:  IESVYI

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1955.08Show/hide
Query:  IRKAHAKPAIAESGCK------------------TSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAES
        I K +AKPAIAESGC                    ST F SK GG LVFS  L           SI PRGNR +L TG+LDKTV IELPVPDTLPTSAES
Subjt:  IRKAHAKPAIAESGCK------------------TSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVYI
        S+++SSTW+ELY ESV++
Subjt:  SRTSSSTWVELYIESVYI

A0A5D3CAC6 Uncharacterized protein3.7e-1636.25Show/hide
Query:  KTHH-RLDFLSAHFHFISHLFPPKLSEHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKT-STGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--
        K HH +L     +F    H FP KLSEH +ERVK EEEEEFRGLRLKKI K+  K     + C+  STGFSSKP G LVFS  LSI       +   W  
Subjt:  KTHH-RLDFLSAHFHFISHLFPPKLSEHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKT-STGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--

Query:  -----------PRGNRSSLQTGELDK--------------------------------------------------------------------------
                   PRGNRSSLQTG+LDK                                                                          
Subjt:  -----------PRGNRSSLQTGELDK--------------------------------------------------------------------------

Query:  -----TVAIELPVPDTLPTSAESSRTSSSTWVELYIESVY
             ++ IEL VPDTLPTSAESS ++SSTW+E   E  Y
Subjt:  -----TVAIELPVPDTLPTSAESSRTSSSTWVELYIESVY

A0A5D3DR18 Gag/pol protein4.8e-1654.72Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  V IELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVAIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVYI
         ESV++
Subjt:  IESVYI

A0A5D3DWP3 Uncharacterized protein2.8e-1664.71Show/hide
Query:  STGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAESSRTSSSTWVELYIESVYI
        STG SSKP G LVFS  LS+     + +    +WPRGNR SLQT ELDKT  IELPVPDTLPTSAESS ++SSTW+ELY ESV++
Subjt:  STGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVAIELPVPDTLPTSAESSRTSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAAACCCACCACCGACTAGACTTTTTATCAGCTCATTTTCATTTCATTTCTCATCTTTTTCCTCCCAAACTTTCAGAGCACATTAAGGAGAGAGTGAA
GGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAGCACAGGATTTTCGA
GCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCGGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACC
GGGGAACTAGATAAGACAGTAGCGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGA
GTCTGTCTATATTGTAAATGTCTTGATCAGCGTTCAGGAGGGTCAGCGGCTATACGTAGCTAAAATATTCACAAAATTTACAATGGATAGCATAAATATGAGCACAATAA
AAGGAAAGGAATTGACAGTCGAAGACCCCGTCGCTGGTGCTTGGAGTCCCTCCGAGCAAACCTTGAGCCTCCTAGAGCGCTCCCCAAAACTCCACAAAATTTTCTCACTA
AAAGAACTCTCAAAAAGGCTAGAAAGCCTTGAGAGAGGCTCCAAAGGAGTCAAGGAAGGAAGGGAAAGAATGAAGGAAATGATGATTGATGGTAAAAATGGGCACCAAGG
GGCTCTATTTATAGGCCCGAAAATTGGACAGCGTCGCAACGCTATGTGCACAGCGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAAACCCACCACCGACTAGACTTTTTATCAGCTCATTTTCATTTCATTTCTCATCTTTTTCCTCCCAAACTTTCAGAGCACATTAAGGAGAGAGTGAA
GGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAGCACAGGATTTTCGA
GCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCGGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACC
GGGGAACTAGATAAGACAGTAGCGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGA
GTCTGTCTATATTGTAAATGTCTTGATCAGCGTTCAGGAGGGTCAGCGGCTATACGTAGCTAAAATATTCACAAAATTTACAATGGATAGCATAAATATGAGCACAATAA
AAGGAAAGGAATTGACAGTCGAAGACCCCGTCGCTGGTGCTTGGAGTCCCTCCGAGCAAACCTTGAGCCTCCTAGAGCGCTCCCCAAAACTCCACAAAATTTTCTCACTA
AAAGAACTCTCAAAAAGGCTAGAAAGCCTTGAGAGAGGCTCCAAAGGAGTCAAGGAAGGAAGGGAAAGAATGAAGGAAATGATGATTGATGGTAAAAATGGGCACCAAGG
GGCTCTATTTATAGGCCCGAAAATTGGACAGCGTCGCAACGCTATGTGCACAGCGTCGTGA
Protein sequenceShow/hide protein sequence
MDSTKTHHRLDFLSAHFHFISHLFPPKLSEHIKERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKTSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQT
GELDKTVAIELPVPDTLPTSAESSRTSSSTWVELYIESVYIVNVLISVQEGQRLYVAKIFTKFTMDSINMSTIKGKELTVEDPVAGAWSPSEQTLSLLERSPKLHKIFSL
KELSKRLESLERGSKGVKEGRERMKEMMIDGKNGHQGALFIGPKIGQRRNAMCTAS