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Spg019634 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019634
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold5:30205997..30209849
RNA-Seq ExpressionSpg019634
SyntenySpg019634
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.2e-1246.99Show/hide
Query:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS
        E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V++LPSFVN  S
Subjt:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.7e-1157.97Show/hide
Query:  VVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT
        + TPM ELFEIL  +GYI VE   L    + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LT
Subjt:  VVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]3.1e-1347.62Show/hide
Query:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.4e-1346.23Show/hide
Query:  TPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTV--SQKMVQLPQYGEVDIIEECSRQEREKRLAR
        TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LTV  S +   +    +V + E  S   + KRL  
Subjt:  TPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTV--SQKMVQLPQYGEVDIIEECSRQEREKRLAR

Query:  LESREP
          S +P
Subjt:  LESREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.6e-0944.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.8e-1338.19Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT
        V  +P P   N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGH+++QC  FR+ VQELLDS  LT
Subjt:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT

Query:  VSQ-------KMVQLPQYGEVDIIEECSRQEREKRLARLESREP
        V+         +V+     E  I E  S   + KRL    S +P
Subjt:  VSQ-------KMVQLPQYGEVDIIEECSRQEREKRLARLESREP

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.8e-1441.94Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT
        V ++P P  +N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LT
Subjt:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT

Query:  VSQKMVQLPQYGEVDIIEECSRQE
        V+       Q   ++I+E+ S  E
Subjt:  VSQKMVQLPQYGEVDIIEECSRQE

TrEMBL top hitse value%identityAlignment
A0A6J1D099 Ribonuclease H5.7e-1346.99Show/hide
Query:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS
        E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V++LPSFVN  S
Subjt:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEIS

A0A6J1D099 Ribonuclease H8.2e-1257.97Show/hide
Query:  VVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT
        + TPM ELFEIL  +GYI VE   L    + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LT
Subjt:  VVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT

A0A6J1DR66 uncharacterized protein LOC1110227911.5e-1347.62Show/hide
Query:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

A0A6J1DZ90 Ribonuclease H6.7e-1446.23Show/hide
Query:  TPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTV--SQKMVQLPQYGEVDIIEECSRQEREKRLAR
        TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LTV  S +   +    +V + E  S   + KRL  
Subjt:  TPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTV--SQKMVQLPQYGEVDIIEECSRQEREKRLAR

Query:  LESREP
          S +P
Subjt:  LESREP

A0A6J1DZ90 Ribonuclease H7.6e-1044.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

A0A6J1DZ90 Ribonuclease H8.7e-1438.19Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT
        V  +P P   N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGH+++QC  FR+ VQELLDS  LT
Subjt:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT

Query:  VSQ-------KMVQLPQYGEVDIIEECSRQEREKRLARLESREP
        V+         +V+     E  I E  S   + KRL    S +P
Subjt:  VSQ-------KMVQLPQYGEVDIIEECSRQEREKRLARLESREP

A0A6J1E2J7 Ribonuclease H1.3e-1441.94Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT
        V ++P P  +N Q+           ++ A  + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +  GAKGHS++QC  FR+KVQELLDS  LT
Subjt:  VEQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLT

Query:  VSQKMVQLPQYGEVDIIEECSRQE
        V+       Q   ++I+E+ S  E
Subjt:  VSQKMVQLPQYGEVDIIEECSRQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAAGTAGCAGAAGATGCACGTACTCTCTCTAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCT
CAAGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCA
AAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTA
GAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTAGATTTTCACTACCTACAGAGAATGCTAAGAGCGTAGTGACTCCCATGGGAGA
ACTATTCGAAATATTATTCAATAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATGACACTGGGG
CAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTAT
GGGGAAGTTGATATTATAGAAGAATGCTCAAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAATATCATTCCTCATCTTCA
TGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAAAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAG
AAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAAGTAGCAGAAGATGCACGTACTCTCTCTAAAGTCATAGCACCTACACAGCCGAATAGCAAGAATGTGCT
CAAGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCA
AAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTA
GAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTAGATTTTCACTACCTACAGAGAATGCTAAGAGCGTAGTGACTCCCATGGGAGA
ACTATTCGAAATATTATTCAATAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATGACACTGGGG
CAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTAT
GGGGAAGTTGATATTATAGAAGAATGCTCAAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAATATCATTCCTCATCTTCA
TGATACCTTCATCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAAAAAGAAGCTGGTCCCTTGGTTTATCTGTGCCCAG
AAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MLTQIRRVTRRADEVAEDARTLSKVIAPTQPNSKNVLKTRIMEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRPLYNIPV
EQHPFPFFKNEQVPVHNQPRFSLPTENAKSVVTPMGELFEILFNNGYIGVERLQLDLGVRAYDDSLMCSYDTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQY
GEVDIIEECSRQEREKRLARLESREPKYQMNIIPHLHDTFIFAGIIHPESQDPAIMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK