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Spg019678 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019678
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold5:34222288..34226968
RNA-Seq ExpressionSpg019678
SyntenySpg019678
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]1.3e-0850Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA
        F+K  LLPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A A
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]1.6e-1131.22Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------
        F+K RLLPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A A                   V R          
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------

Query:  ---------EASFNLLN----------------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL
                  AS N  N                                        Y + RD  LKKALQ NF++P P  PAFP++ L
Subjt:  ---------EASFNLLN----------------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]4.8e-1129.63Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------
        F+K RLLPTTH  TVS++R+LL +++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A A                   V R          
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------

Query:  --------------EASFNLLN-----------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL
                       A+ ++L                                    Y + RD  LKKALQ NF++P P  P FP++ L
Subjt:  --------------EASFNLLN-----------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL

PON65869.1 hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii]7.7e-0952.94Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA
        F+K RLLPTTH   VS+E VLL +++L   SI+VG+II  EI  C  +K G LFFP+ IT  C+ A A
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]7.4e-1231.82Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGAGVCRE---------------------------
        F+K RLLPTTH   VS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A   V  E                           
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGAGVCRE---------------------------

Query:  --------ASFNLLN-----------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL
                AS +  N                             Y + RD  LKKALQ NF++P P  PAFP++ L
Subjt:  --------ASFNLLN-----------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)6.3e-0950Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA
        F+K  LLPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A A
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA

A0A2P5BCG4 Uncharacterized protein (Fragment)8.0e-1231.22Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------
        F+K RLLPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A A                   V R          
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------

Query:  ---------EASFNLLN----------------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL
                  AS N  N                                        Y + RD  LKKALQ NF++P P  PAFP++ L
Subjt:  ---------EASFNLLN----------------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL

A0A2P5CEY2 Uncharacterized protein2.3e-1129.63Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------
        F+K RLLPTTH  TVS++R+LL +++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A A                   V R          
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA------------------GVCR----------

Query:  --------------EASFNLLN-----------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL
                       A+ ++L                                    Y + RD  LKKALQ NF++P P  P FP++ L
Subjt:  --------------EASFNLLN-----------------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL

A0A2P5CXU3 Uncharacterized protein (Fragment)3.7e-0952.94Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA
        F+K RLLPTTH   VS+E VLL +++L   SI+VG+II  EI  C  +K G LFFP+ IT  C+ A A
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGA

A0A2P5DXM3 Uncharacterized protein3.6e-1231.82Show/hide
Query:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGAGVCRE---------------------------
        F+K RLLPTTH   VS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT  C+ A   V  E                           
Subjt:  FIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGAGVCRE---------------------------

Query:  --------ASFNLLN-----------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL
                AS +  N                             Y + RD  LKKALQ NF++P P  PAFP++ L
Subjt:  --------ASFNLLN-----------------------------YVRSRDANLKKALQENFSKPFPVLPAFPEDFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGAGTGCTTCTGGCTTTCGCTATTTTGAGGTCTCTCAGTATTGATGTGGG
AAAAATTATTGCTGATGAAATATCTGGATGTTGGAAGAAGAAAGTGGGGAAGCTGTTTTTCCCGAATACCATTACCATGTTTTGCAAGCGAGCAGGGGCAGGAGTTTGCC
GAGAGGCAAGCTTTAACCTTCTGAACTATGTTAGAAGTCGTGATGCCAATCTGAAGAAGGCGCTGCAGGAGAATTTTTCCAAGCCATTTCCAGTCCTTCCAGCATTCCCT
GAAGATTTCTTGGACTGGTTGAGCTTAATTAGATCAAGAGCTCGACTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATAT
ATCTGCAGCAGTCCTTGGTTTTGCAGAATGCTTAGAATATGTTGCTGGGCGACTTAAGGGAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGAAAAACTGCCACCCGAATA
GAGGAGAGAGATTGGAGACCATCAAGAAGTCCTTCATTTGCAAGCTGATCGAGGAGATTAATATTTTCCTTCATTATCTTATGATTATGGATATGCTTACTCAGATTGTA
ACGCATTGGACGAAACGCTTGGACATCATTTTCGGAGCCAAAAGAATCAAGCAAGAAATTGCATATTTTAGAGCAACCCGAGAGCAAGCGTCTCGACGCCATGATGGCAG
CATTGAGACGCCGCCCCGAGCCTTGGAGGTTGCAAGGACTTCCATAGATTTGAGCTTGATCAAGAAGCTCATTGCTAATTCGAGATTGAAGGTAACCTCCCCAGAAAAGA
AGGCTCAAACTACTCCTATAGCCCAAGCCTCAACACCTCTAGAAAATTCCACAGCAGCAGATGCGACCGCAAACCAACTACAAAATCCAACTCTTCCAGTGCCAGCTCCC
CCACAACAACCTAAAGACAATATAGTGGAGCTGAGGAGAGATCTGGAGTACATGAGGGAGCAATGCAGATTCTACATGCCATATGCCCAGCTCCGAGACCATGTGATAAG
AAAGGTCTTCAATGAGCTCGTAGAAGACTTATTTGATTATCTCCCTCCTTTCCCCGAAATAAATATGGACCCACCTAGAGGCGATGAAGCTGACCCTTCAAATGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGAGTGCTTCTGGCTTTCGCTATTTTGAGGTCTCTCAGTATTGATGTGGG
AAAAATTATTGCTGATGAAATATCTGGATGTTGGAAGAAGAAAGTGGGGAAGCTGTTTTTCCCGAATACCATTACCATGTTTTGCAAGCGAGCAGGGGCAGGAGTTTGCC
GAGAGGCAAGCTTTAACCTTCTGAACTATGTTAGAAGTCGTGATGCCAATCTGAAGAAGGCGCTGCAGGAGAATTTTTCCAAGCCATTTCCAGTCCTTCCAGCATTCCCT
GAAGATTTCTTGGACTGGTTGAGCTTAATTAGATCAAGAGCTCGACTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAATTATAT
ATCTGCAGCAGTCCTTGGTTTTGCAGAATGCTTAGAATATGTTGCTGGGCGACTTAAGGGAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGAAAAACTGCCACCCGAATA
GAGGAGAGAGATTGGAGACCATCAAGAAGTCCTTCATTTGCAAGCTGATCGAGGAGATTAATATTTTCCTTCATTATCTTATGATTATGGATATGCTTACTCAGATTGTA
ACGCATTGGACGAAACGCTTGGACATCATTTTCGGAGCCAAAAGAATCAAGCAAGAAATTGCATATTTTAGAGCAACCCGAGAGCAAGCGTCTCGACGCCATGATGGCAG
CATTGAGACGCCGCCCCGAGCCTTGGAGGTTGCAAGGACTTCCATAGATTTGAGCTTGATCAAGAAGCTCATTGCTAATTCGAGATTGAAGGTAACCTCCCCAGAAAAGA
AGGCTCAAACTACTCCTATAGCCCAAGCCTCAACACCTCTAGAAAATTCCACAGCAGCAGATGCGACCGCAAACCAACTACAAAATCCAACTCTTCCAGTGCCAGCTCCC
CCACAACAACCTAAAGACAATATAGTGGAGCTGAGGAGAGATCTGGAGTACATGAGGGAGCAATGCAGATTCTACATGCCATATGCCCAGCTCCGAGACCATGTGATAAG
AAAGGTCTTCAATGAGCTCGTAGAAGACTTATTTGATTATCTCCCTCCTTTCCCCGAAATAAATATGGACCCACCTAGAGGCGATGAAGCTGACCCTTCAAATGCCTAG
Protein sequenceShow/hide protein sequence
MGFIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVGKIIADEISGCWKKKVGKLFFPNTITMFCKRAGAGVCREASFNLLNYVRSRDANLKKALQENFSKPFPVLPAFP
EDFLDWLSLIRSRARLWQVLRIELKVVIICPCRKNYISAAVLGFAECLEYVAGRLKGAKSVLEQSWEKNCHPNRGERLETIKKSFICKLIEEINIFLHYLMIMDMLTQIV
THWTKRLDIIFGAKRIKQEIAYFRATREQASRRHDGSIETPPRALEVARTSIDLSLIKKLIANSRLKVTSPEKKAQTTPIAQASTPLENSTAADATANQLQNPTLPVPAP
PQQPKDNIVELRRDLEYMREQCRFYMPYAQLRDHVIRKVFNELVEDLFDYLPPFPEINMDPPRGDEADPSNA