CuGenDBv2

Gene ID	Spg019708
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	scaffold5:36540006..36552577
RNA-Seq Expression	Spg019708
Synteny	Spg019708
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003676 - nucleic acid binding (molecular function) GO:0016874 - ligase activity (molecular function) GO:0043168 - anion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046934.1 uncharacterized protein E6C27_scaffold230G001030 [Cucumis melo var. makuwa]

4.1e-34

64.93

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AH LFGHIDDSL  P +++ SP    T E + EY+QWLS DQALITLINATLS SA+A VVGS SSK L  SL+KRY+SN +++ILDL  ALYTIKK S+
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL
        ++IE+YT +IK +VDKLA  SV++E EEILVHTL
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL

KAA0057164.1 beta-glucosidase 18-like [Cucumis melo var. makuwa]

1.6e-33

61.15

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AHSLFGHIDD+L  P +++ S T    +E++ EY+QWLSRDQALITLIN TLS S++A VVGSVSSK L +SLEK Y+SNT+S+ILDL            
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS
         SI++YT RIK +VDKL A SV++EDEEILVHT NGLP+
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]

3.5e-41

69.06

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AHSLFGHIDD+L  P +++ S T    +E++ EY+QWLSRDQALITLIN TLS SA+A VV SVSSK L +SLEKRY+SNTRS+ILDL  ALYTI K  +
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS
        ESI++YT RIK +VDKLAA SV++EDEEILVHTLNGLP+
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS

TYK03217.1 uncharacterized protein E5676_scaffold298G00290 [Cucumis melo var. makuwa]

4.1e-34

64.93

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AH LFGHIDDSL  P +++ SP    T E + EY+QWLS DQALITLINATLS SA+A VVGS SSK L  SL+KRY+SN +++ILDL  ALYTIKK S+
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL
        ++IE+YT +IK +VDKLA  SV++E EEILVHTL
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL

XP_016902970.1 PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo]

4.0e-37

63.31

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        A+S FGHIDD+L  P +++   T    ++++ EY+QWLS DQALITLIN TLS SA+A VVGSVSSK L +SLEKRY+SNT+S+ILDL  ALYT+KK  +
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS
        ESI++YT RIK  VDKLAA S+++E+E ILVHTLNGLP+
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E4S1 uncharacterized protein LOC107991968

1.9e-37

63.31

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        A+S FGHIDD+L  P +++   T    ++++ EY+QWLS DQALITLIN TLS SA+A VVGSVSSK L +SLEKRY+SNT+S+ILDL  ALYT+KK  +
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS
        ESI++YT RIK  VDKLAA S+++E+E ILVHTLNGLP+
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS

A0A5A7T8B0 Retrotransposon protein

1.9e-37

63.31

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        A+S FGHIDD+L  P +++   T    ++++ EY+QWLS DQALITLIN TLS SA+A VVGSVSSK L +SLEKRY+SNT+S+ILDL  ALYT+KK  +
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS
        ESI++YT RIK  VDKLAA S+++E+E ILVHTLNGLP+
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS

A0A5A7TVE6 Integrase catalytic domain-containing protein

2.0e-34

64.93

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AH LFGHIDDSL  P +++ SP    T E + EY+QWLS DQALITLINATLS SA+A VVGS SSK L  SL+KRY+SN +++ILDL  ALYTIKK S+
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL
        ++IE+YT +IK +VDKLA  SV++E EEILVHTL
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL

A0A5A7UZE5 Putative mitochondrial protein

1.7e-41

69.06

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AHSLFGHIDD+L  P +++ S T    +E++ EY+QWLSRDQALITLIN TLS SA+A VV SVSSK L +SLEKRY+SNTRS+ILDL  ALYTI K  +
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS
        ESI++YT RIK +VDKLAA SV++EDEEILVHTLNGLP+
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPS

A0A5D3BUR4 Integrase catalytic domain-containing protein

2.0e-34

64.93

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Query:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST
        AH LFGHIDDSL  P +++ SP    T E + EY+QWLS DQALITLINATLS SA+A VVGS SSK L  SL+KRY+SN +++ILDL  ALYTIKK S+
Subjt:  AHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLINATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLST

Query:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL
        ++IE+YT +IK +VDKLA  SV++E EEILVHTL
Subjt:  ESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCAAATTCCGAACAGGGAGAACTCATCGGACCTTCACGCGACACCAACAGTATATTTTTTAAAAGGGGGGAAGACGTGACCTACAAAACAAGGAAACTACACACCTG
TGTGGTGCTTGTCACACCGCCTCCGATGCTTAAGTTAGCAAGGAGAAAGATGTGGAAGCAAAGTAAGAGAGCAAGAGGCATTTGGAGGCGATTCAGAGCTGAACCAAGTC
GAACCGGGTTTTCCAGGGACACTAGAGGCTCCATGAAGAGGAATGGGCTCTACCTCGGCCAAGCCAAGGGAATTGGGCGAAGCCCAATCCCTTTGGCCCTTGGCTCCGTC
AGGGTCTTTCCTTGGTCATTTCCTCAGGTTCGTCTTGAACAATGGGCCCTTATACCAAAAGGGAACAGCTTACATATCCCAAACAAGGATCGACTAGCTGATGAGAAGGC
AGGTTATGTGGATGCTAGTTCAATTAATATTGAGGGGATCATGGATTTGCAGAAAGGAAATTGCAAGCCAATTTGGGCTCACTCCCTATTTGGCCATATTGATGACTCTC
TGCGAAAACCCAATCAGTATATTTCTTCTCCAACAGGAACAGCAACAACAGAGGTCAGTTCTGAGTATATTCAATGGTTATCTCGTGATCAAGCTTTAATCACCTTAATC
AACGCAACTCTATCTCCTTCTGCCGTTGCAGATGTGGTTGGCTCTGTTTCATCAAAAGATTTATGTGTTTCATTGGAAAAACGTTATGCTTCCAACACTAGATCTAGTAT
TCTTGATTTACACTACGCTCTATATACAATCAAGAAACTTTCTACTGAATCGATTGAAAAATACACCTGTCGAATTAAGGAAATCGTGGACAAGCTTGCTGCCGTTTCCG
TTAATATTGAAGATGAAGAGATACTCGTACATACCTTGAACGGTCTTCCCTCTGAGCTCTGA

mRNA sequence

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Protein sequence

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MPNSEQGELIGPSRDTNSIFFKRGEDVTYKTRKLHTCVVLVTPPPMLKLARRKMWKQSKRARGIWRRFRAEPSRTGFSRDTRGSMKRNGLYLGQAKGIGRSPIPLALGSV
RVFPWSFPQVRLEQWALIPKGNSLHIPNKDRLADEKAGYVDASSINIEGIMDLQKGNCKPIWAHSLFGHIDDSLRKPNQYISSPTGTATTEVSSEYIQWLSRDQALITLI
NATLSPSAVADVVGSVSSKDLCVSLEKRYASNTRSSILDLHYALYTIKKLSTESIEKYTCRIKEIVDKLAAVSVNIEDEEILVHTLNGLPSEL

Spg019708 (gene) of Sponge gourd (cylindrica) v1 genome